Wall clock time and date at job start Thu Apr 9 2020 12:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48500 * 109.46632 * 269.99125 * 3 2 1 5 5 H 1.48493 * 109.47424 * 29.99037 * 3 2 1 6 6 H 1.48495 * 109.47055 * 149.99848 * 3 2 1 7 7 C 1.37880 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99994 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99603 * 180.02562 * 7 2 1 10 10 S 1.81395 * 109.46711 * 180.02562 * 9 7 2 11 11 C 1.81405 * 102.99719 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47114 * 179.97438 * 11 10 9 13 13 C 1.35449 * 126.77663 * 89.98304 * 12 11 10 14 14 C 1.41387 * 103.98917 * 180.02562 * 13 12 11 15 15 C 1.50694 * 126.80435 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49958 * 343.74850 * 15 14 13 17 17 C 1.52995 * 117.50195 * 275.08673 * 15 14 13 18 18 N 1.30173 * 106.39214 * 0.02562 * 14 13 12 19 19 O 1.20923 * 111.60616 * 359.97438 * 18 14 13 20 20 H 0.97003 * 120.00122 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46998 * 60.00449 * 9 7 2 22 22 H 1.09003 * 109.47068 * 300.00494 * 9 7 2 23 23 H 1.08998 * 109.46938 * 60.00212 * 11 10 9 24 24 H 1.08996 * 109.46951 * 300.00128 * 11 10 9 25 25 H 1.08004 * 128.00729 * 0.07331 * 13 12 11 26 26 H 1.09005 * 115.55017 * 129.41236 * 15 14 13 27 27 H 1.08998 * 117.49821 * 359.97438 * 16 15 14 28 28 H 1.09000 * 117.50048 * 145.02131 * 16 15 14 29 29 H 1.08998 * 117.50084 * 214.97900 * 17 15 14 30 30 H 1.09006 * 117.49384 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9043 0.0010 11 6 5.9186 -2.6998 0.0009 12 6 6.5779 -4.0549 0.0014 13 6 6.9324 -4.7847 -1.0832 14 6 7.5022 -5.9568 -0.5352 15 6 8.0699 -7.1262 -1.2975 16 6 7.7057 -7.2479 -2.7785 17 6 7.0935 -8.2105 -1.7578 18 7 7.4383 -5.8262 0.7584 19 8 6.9284 -4.7765 1.0753 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 6.2217 -2.1484 0.8909 24 1 6.2216 -2.1482 -0.8890 25 1 6.8091 -4.5298 -2.1255 26 1 9.0687 -7.4430 -0.9971 27 1 7.0553 -6.4823 -3.2014 28 1 8.4648 -7.6451 -3.4524 29 1 7.4500 -9.2405 -1.7607 30 1 6.0406 -8.0781 -1.5089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:50 Heat of formation + Delta-G solvation = 60.669203 kcal Electronic energy + Delta-G solvation = -13883.234773 eV Core-core repulsion = 11387.156922 eV Total energy + Delta-G solvation = -2496.077851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.98230 -38.49248 -35.19983 -34.78592 -33.91962 -31.46296 -28.98175 -25.63079 -24.69757 -23.76832 -22.95120 -20.84595 -19.13003 -18.73712 -18.34978 -17.19533 -16.66192 -16.16127 -15.56760 -15.38214 -15.18584 -15.03845 -14.45713 -14.27559 -13.71433 -13.06224 -12.68409 -12.60371 -12.46113 -12.40201 -12.12352 -12.07743 -11.77802 -11.36156 -10.93152 -10.85779 -10.70802 -10.26485 -8.59418 -8.36115 -6.46925 0.00468 0.96002 1.34529 1.37792 1.41113 1.50317 1.85468 2.03076 2.31469 2.70702 2.97453 3.09033 3.43075 3.84401 3.92980 3.98938 4.09475 4.22267 4.30773 4.54011 4.62475 4.63635 4.75554 4.77900 4.93103 5.05264 5.10260 5.22590 5.33749 6.07075 6.57693 7.15784 7.18571 8.79942 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.048055 B = 0.004528 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.527795 B = 6182.423971 C = 6367.921479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.051 3.949 10 S -0.290 6.290 11 C -0.009 4.009 12 C -0.011 4.011 13 C -0.208 4.208 14 C 0.048 3.952 15 C -0.106 4.106 16 C -0.144 4.144 17 C -0.167 4.167 18 N -0.388 5.388 19 O 0.083 5.917 20 H 0.273 0.727 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.116 0.884 24 H 0.139 0.861 25 H 0.197 0.803 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.283 -8.500 -5.613 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.097 4.097 10 S -0.063 6.063 11 C -0.157 4.157 12 C -0.075 4.075 13 C -0.232 4.232 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.181 4.181 17 C -0.205 4.205 18 N -0.095 5.095 19 O 0.019 5.981 20 H 0.082 0.918 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.134 0.866 24 H 0.157 0.843 25 H 0.214 0.786 26 H 0.150 0.850 27 H 0.119 0.881 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.898 -10.059 -4.541 21.884 hybrid contribution -0.025 2.008 -0.375 2.043 sum 18.872 -8.050 -4.916 21.098 Atomic orbital electron populations 1.70030 1.08490 1.28830 1.50759 1.25941 0.95658 1.03380 0.93166 0.85579 0.79564 0.77332 0.79739 1.18357 1.20669 1.16284 1.20666 0.89636 0.93742 1.53144 0.94936 1.21279 0.97973 0.89984 1.00476 1.87300 1.02984 1.17848 1.98160 1.21743 0.93186 0.91574 1.09165 1.23731 1.00685 0.96568 0.86529 1.22676 1.04888 0.93793 1.01802 1.23157 1.00666 0.97901 0.89365 1.20273 1.00370 0.94386 0.97417 1.23183 1.03481 1.01801 0.89626 1.23106 0.97919 0.96347 1.03116 1.73796 1.16747 1.01415 1.17535 1.84815 1.57458 1.22125 1.33717 0.91838 0.93302 0.92942 0.86597 0.84323 0.78600 0.84970 0.88089 0.85271 0.85982 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.96 41.02 27.47 68.60 1.88 42.91 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.53 -30.42 9.68 25.60 0.25 -30.17 16 8 H 0.03 2.12 7.96 -2.91 -0.02 2.10 16 9 C 0.05 2.27 4.77 71.24 0.34 2.61 16 10 S -0.29 -11.63 21.64 -56.49 -1.22 -12.86 16 11 C -0.01 -0.24 6.51 71.23 0.46 0.22 16 12 C -0.01 -0.31 6.75 25.04 0.17 -0.14 16 13 C -0.21 -5.09 10.40 22.40 0.23 -4.85 16 14 C 0.05 1.23 6.95 43.58 0.30 1.53 16 15 C -0.11 -1.97 6.33 -11.54 -0.07 -2.05 16 16 C -0.14 -1.92 10.05 30.62 0.31 -1.61 16 17 C -0.17 -2.73 10.24 30.62 0.31 -2.42 16 18 N -0.39 -12.14 12.07 -49.55 -0.60 -12.74 16 19 O 0.08 2.64 11.20 71.61 0.80 3.44 16 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 21 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 22 H 0.05 2.15 7.57 -2.39 -0.02 2.13 16 23 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 24 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.20 3.66 7.63 -2.91 -0.02 3.64 16 26 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.10 1.38 7.34 -2.39 -0.02 1.36 16 28 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -68.72 279.08 5.01 -63.71 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.08 Total: 8.30 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.77 Total: -35.37 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.30 Total: -70.13 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.80 Total: 3.44 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.91 kcal Atomic # 16 Polarization: -11.63 SS G_CDS: -1.22 Total: -12.86 kcal Total: -68.72 5.01 -63.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.377 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds