Wall clock time and date at job start Thu Apr 9 2020 12:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 C 1.46497 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46762 * 180.02562 * 8 7 5 10 10 H 1.08005 * 120.00263 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99878 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99999 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47589 * 59.99804 * 13 11 9 15 15 H 1.48502 * 109.47191 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47281 * 299.99532 * 13 11 9 17 17 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 18 18 C 1.50701 * 124.59501 * 180.20062 * 17 4 3 19 19 S 1.70453 * 110.81620 * 0.47711 * 17 4 3 20 20 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 21 21 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 22 22 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 23 23 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 24 24 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 25 25 H 1.08998 * 109.47257 * 299.99802 * 8 7 5 26 26 H 1.08999 * 109.46890 * 60.00858 * 8 7 5 27 27 H 0.97005 * 119.99781 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47114 * 180.34080 * 18 17 4 29 29 H 1.08998 * 109.46634 * 300.34064 * 18 17 4 30 30 H 1.08998 * 109.47062 * 60.33564 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 6 5.4108 4.1761 -0.0202 9 6 4.7634 5.5370 -0.0186 10 1 3.6868 5.6229 -0.0129 11 6 5.5456 6.6724 -0.0245 12 7 6.8565 6.5678 -0.0310 13 14 4.7431 8.3593 -0.0218 14 1 3.9054 8.5071 1.1954 15 1 5.7948 9.4077 -0.0285 16 1 3.8914 8.5043 -1.2296 17 6 3.9477 -0.5327 -0.0001 18 6 5.3335 -1.1250 -0.0001 19 16 2.5065 -1.4427 -0.0001 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3632 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.8615 2.0940 -0.0004 24 1 3.4367 3.3943 -0.0097 25 1 6.0351 4.0701 0.8670 26 1 6.0266 4.0674 -0.9130 27 1 7.4068 7.3667 -0.0347 28 1 5.2636 -2.2128 -0.0006 29 1 5.8696 -0.7950 -0.8899 30 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701338171.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:21 Heat of formation + Delta-G solvation = -27.257613 kcal Electronic energy + Delta-G solvation = -14312.291294 eV Core-core repulsion = 11812.400650 eV Total energy + Delta-G solvation = -2499.890644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.24274 -36.80291 -34.28542 -32.87330 -32.30056 -29.38788 -27.41122 -25.11306 -23.71096 -21.90661 -20.33918 -18.77607 -17.03156 -16.75164 -15.63168 -14.95130 -14.70113 -14.38029 -13.82080 -13.76502 -13.12004 -13.08191 -13.04818 -12.74304 -12.02310 -11.81570 -11.79605 -11.45802 -11.42017 -10.99417 -10.86385 -10.86163 -10.30371 -9.40135 -9.05495 -8.72232 -8.52916 -8.31780 -7.79169 -6.15536 -4.22450 0.97424 1.55495 1.97008 2.23098 3.26051 3.30737 3.32292 4.01044 4.20435 4.43315 4.71649 5.02551 5.15867 5.20525 5.33700 5.40644 5.55974 5.68615 5.81532 5.86708 6.08606 6.17511 6.37653 6.46094 7.33023 7.45486 7.53477 7.68530 7.98174 8.65077 8.79340 9.11786 9.44088 10.94698 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.005523 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.749082 B = 5068.167851 C = 5835.160395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.207 4.207 3 C -0.106 4.106 4 C -0.159 4.159 5 C 0.559 3.441 6 O -0.552 6.552 7 N -0.705 5.705 8 C 0.250 3.750 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.149 4.149 18 C -0.075 4.075 19 S 0.153 5.847 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.148 0.852 24 H 0.390 0.610 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -14.307 0.069 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.324 4.324 3 C -0.135 4.135 4 C -0.176 4.176 5 C 0.344 3.656 6 O -0.433 6.433 7 N -0.352 5.352 8 C 0.130 3.870 9 C -0.582 4.582 10 H 0.080 0.920 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.268 4.268 18 C -0.133 4.133 19 S 0.418 5.582 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.165 0.835 24 H 0.223 0.777 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.106 -15.897 0.065 19.392 hybrid contribution -0.462 2.745 -0.003 2.784 sum -11.568 -13.152 0.062 17.516 Atomic orbital electron populations 1.20306 0.87725 1.03054 1.02653 1.24179 1.00055 0.95970 1.12160 1.21208 0.91285 0.99397 1.01582 1.20448 0.93725 0.93454 1.09930 1.17578 0.87508 0.82668 0.77882 1.90725 1.18663 1.82237 1.51672 1.46347 1.11449 1.05542 1.71889 1.19123 0.86338 0.83761 0.97815 1.21187 0.93294 0.90393 1.53337 0.91983 1.24943 0.94787 0.99538 0.94681 1.69968 1.03691 1.29815 1.48825 0.86472 0.78904 0.82831 0.78685 1.20068 1.21044 1.20064 1.24396 1.01342 0.96657 1.04452 1.20360 0.89793 0.98229 1.04930 1.82770 0.93963 1.08995 1.72452 0.90894 0.91513 0.90483 0.83477 0.77732 0.95410 0.95407 0.92391 0.92385 0.89551 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.35 36.01 0.37 -0.30 16 2 C -0.21 -2.50 6.44 -36.18 -0.23 -2.73 16 3 C -0.11 -1.51 9.75 -39.02 -0.38 -1.89 16 4 C -0.16 -2.77 5.98 -104.63 -0.63 -3.39 16 5 C 0.56 12.09 7.79 -12.63 -0.10 11.99 16 6 O -0.55 -13.58 14.64 5.24 0.08 -13.50 16 7 N -0.70 -15.66 5.53 -62.64 -0.35 -16.00 16 8 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 9 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 10 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 13 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.15 -2.27 6.34 -35.11 -0.22 -2.50 16 18 C -0.07 -1.07 8.77 36.01 0.32 -0.76 16 19 S 0.15 1.80 22.93 -107.50 -2.46 -0.67 16 20 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.15 1.88 7.10 -52.49 -0.37 1.51 16 24 H 0.39 7.51 6.86 -40.82 -0.28 7.23 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.09 1.34 7.76 -51.93 -0.40 0.94 16 30 H 0.09 1.34 7.80 -51.93 -0.41 0.93 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -31.86 277.08 -7.69 -39.55 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.53 Total: 2.44 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.32 Total: -6.39 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.39 Total: -41.54 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.46 Total: -0.67 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.86 -7.69 -39.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701338171.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.289 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds