Wall clock time and date at job start Thu Apr 9 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48492 * 109.47475 * 275.33686 * 3 2 1 5 5 H 1.48504 * 109.46906 * 35.33956 * 3 2 1 6 6 H 1.48497 * 109.47183 * 155.33635 * 3 2 1 7 7 C 1.39017 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99919 * 335.83681 * 7 2 1 9 9 N 1.36914 * 119.99947 * 155.83864 * 7 2 1 10 10 C 1.46497 * 120.00136 * 326.54135 * 9 7 2 11 11 C 1.50706 * 109.46879 * 264.76292 * 10 9 7 12 12 O 1.20824 * 120.00157 * 4.41108 * 11 10 9 13 13 O 1.34225 * 119.99693 * 184.41300 * 11 10 9 14 14 C 1.34777 * 119.99962 * 146.54476 * 9 7 2 15 15 O 1.21611 * 119.99743 * 355.08365 * 14 9 7 16 16 C 1.47609 * 120.00289 * 175.09006 * 14 9 7 17 17 C 1.41542 * 126.52647 * 178.46987 * 16 14 9 18 18 C 1.35343 * 105.50217 * 179.83902 * 17 16 14 19 19 N 1.35048 * 107.24202 * 0.41462 * 18 17 16 20 20 H 0.97008 * 124.88004 * 179.72096 * 19 18 17 21 21 N 1.28467 * 110.23975 * 359.72713 * 19 18 17 22 22 H 0.96996 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47157 * 24.76090 * 10 9 7 24 24 H 1.08991 * 109.47106 * 144.76369 * 10 9 7 25 25 H 0.96700 * 117.00445 * 179.97438 * 13 11 10 26 26 H 1.07998 * 127.24920 * 359.96774 * 17 16 14 27 27 H 1.08009 * 126.37867 * 180.13991 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.3826 2.1116 -1.3939 5 1 1.5062 2.6175 0.8099 6 1 3.5972 1.4103 0.5842 7 6 2.0090 -1.2039 -0.0005 8 1 1.5400 -2.0984 0.3819 9 7 3.2882 -1.2556 -0.4859 10 6 3.6844 -0.3908 -1.6000 11 6 3.5511 -1.1483 -2.8960 12 8 3.0898 -2.2650 -2.8983 13 8 3.9450 -0.5824 -4.0476 14 6 4.1828 -2.1022 0.0613 15 8 3.8813 -2.7549 1.0421 16 6 5.5286 -2.2371 -0.5299 17 6 6.5798 -3.0565 -0.0534 18 6 7.6095 -2.8578 -0.9089 19 7 7.1953 -1.9647 -1.8333 20 1 7.7362 -1.6359 -2.5684 21 7 5.9822 -1.6129 -1.5991 22 1 -0.4849 0.8400 0.0004 23 1 3.0400 0.4880 -1.6248 24 1 4.7200 -0.0782 -1.4667 25 1 3.8402 -1.1072 -4.8530 26 1 6.5629 -3.7054 0.8097 27 1 8.5829 -3.3232 -0.8588 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087506.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:31 Heat of formation + Delta-G solvation = -46.796138 kcal Electronic energy + Delta-G solvation = -17485.580370 eV Core-core repulsion = 14438.549258 eV Total energy + Delta-G solvation = -3047.031112 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.54112 -41.39187 -40.03357 -37.23246 -36.63851 -34.34616 -32.71440 -31.64514 -29.73437 -27.61600 -24.34427 -23.19572 -22.55402 -20.60916 -19.39620 -19.21301 -19.13480 -18.11405 -17.50860 -17.21705 -16.58151 -16.44227 -15.69185 -15.34190 -14.64928 -14.51228 -14.49182 -14.13290 -13.88980 -13.72376 -12.90563 -12.57426 -12.40993 -11.97543 -11.74160 -11.65070 -11.22523 -10.76767 -10.34115 -10.12879 -9.97458 -8.60529 -6.19745 0.57263 1.13613 1.20399 1.33609 1.36692 1.45060 1.90127 2.11181 2.13098 2.37263 2.66947 3.03362 3.46899 3.92003 4.03327 4.19764 4.28827 4.51659 4.81887 4.85096 5.31244 5.46485 5.63288 5.94013 6.22738 6.42406 6.74832 6.94118 7.01745 7.15211 7.65543 8.56603 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.011166 C = 0.009626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.872157 B = 2507.001106 C = 2908.125318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.015 3.985 3 Si 0.931 3.069 4 H -0.229 1.229 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.341 4.341 8 H 0.049 0.951 9 N -0.443 5.443 10 C 0.097 3.903 11 C 0.487 3.513 12 O -0.545 6.545 13 O -0.500 6.500 14 C 0.537 3.463 15 O -0.597 6.597 16 C -0.029 4.029 17 C -0.216 4.216 18 C 0.029 3.971 19 N -0.365 5.365 20 H 0.465 0.535 21 N -0.292 5.292 22 H 0.286 0.714 23 H 0.106 0.894 24 H 0.150 0.850 25 H 0.422 0.578 26 H 0.157 0.843 27 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.731 2.997 -9.148 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.189 4.189 3 Si 0.752 3.248 4 H -0.154 1.154 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.469 4.469 8 H 0.067 0.933 9 N -0.164 5.164 10 C -0.027 4.027 11 C 0.328 3.672 12 O -0.434 6.434 13 O -0.313 6.313 14 C 0.327 3.673 15 O -0.480 6.480 16 C -0.187 4.187 17 C -0.244 4.244 18 C -0.117 4.117 19 N -0.082 5.082 20 H 0.314 0.686 21 N -0.131 5.131 22 H 0.096 0.904 23 H 0.123 0.877 24 H 0.167 0.833 25 H 0.283 0.717 26 H 0.175 0.825 27 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 17.947 3.446 -9.102 20.416 hybrid contribution -0.274 -0.547 0.059 0.615 sum 17.672 2.899 -9.043 20.062 Atomic orbital electron populations 1.69865 1.08103 1.29966 1.45023 1.26186 0.96013 1.02086 0.94651 0.86101 0.80114 0.77979 0.80601 1.15399 1.19536 1.17551 1.18672 0.87813 0.96446 1.43931 0.93310 1.43208 1.09844 1.36753 1.26556 1.21796 1.05324 0.93304 0.82322 1.23821 0.72151 0.84882 0.86326 1.90688 1.43055 1.22165 1.87524 1.84458 1.78023 1.51055 1.17761 1.17611 0.83254 0.82930 0.83512 1.90602 1.79563 1.49045 1.28766 1.21941 0.96151 1.03408 0.97226 1.22014 0.92492 1.05138 1.04766 1.23535 1.02011 0.95947 0.90218 1.43489 1.08691 1.31559 1.24417 0.68624 1.73484 0.98221 1.23773 1.17574 0.90385 0.87721 0.83319 0.71672 0.82481 0.74103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.89 13.96 21.68 0.30 -53.59 15 2 C 0.01 0.85 5.27 84.95 0.45 1.29 15 3 Si 0.93 41.05 24.99 68.60 1.71 42.76 15 4 H -0.23 -8.63 6.63 99.48 0.66 -7.97 15 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 6 H -0.25 -10.86 7.11 99.48 0.71 -10.16 15 7 C -0.34 -21.45 9.40 84.09 0.79 -20.66 15 8 H 0.05 3.58 7.88 -2.91 -0.02 3.55 15 9 N -0.44 -24.15 1.77 -643.13 -1.14 -25.28 15 10 C 0.10 4.26 4.24 85.64 0.36 4.62 15 11 C 0.49 20.02 6.92 71.24 0.49 20.51 15 12 O -0.54 -27.31 17.14 21.97 0.38 -26.93 15 13 O -0.50 -14.34 13.42 -51.37 -0.69 -15.03 15 14 C 0.54 28.99 7.52 86.72 0.65 29.65 15 15 O -0.60 -36.74 16.78 -4.07 -0.07 -36.81 15 16 C -0.03 -1.17 6.75 42.43 0.29 -0.88 15 17 C -0.22 -6.74 10.81 22.42 0.24 -6.50 15 18 C 0.03 0.52 12.02 83.53 1.00 1.53 15 19 N -0.37 -7.16 6.83 -57.51 -0.39 -7.55 15 20 H 0.46 4.32 8.96 -219.98 -1.97 2.35 15 21 N -0.29 -9.42 7.83 -48.20 -0.38 -9.80 15 22 H 0.29 15.50 8.31 -92.71 -0.77 14.73 15 23 H 0.11 4.52 3.12 -2.39 -0.01 4.51 15 24 H 0.15 5.60 5.76 -2.39 -0.01 5.59 15 25 H 0.42 7.97 9.10 -74.06 -0.67 7.29 15 26 H 0.16 4.83 8.06 -2.91 -0.02 4.81 15 27 H 0.24 1.34 8.06 -2.91 -0.02 1.32 15 Total: -1.00 -89.95 245.74 2.58 -87.38 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -1.43 Total: 15.30 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 4.28 Total: 29.56 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -1.60 Total: -96.22 kcal Atomic # 8 Polarization: -78.39 SS G_CDS: -0.38 Total: -78.77 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.71 Total: 42.76 kcal Total: -89.95 2.58 -87.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087506.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.582 kcal (2) G-P(sol) polarization free energy of solvation -89.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds