Wall clock time and date at job start Thu Apr 9 2020 12:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35367 * 117.00264 * 2 1 4 4 C 1.36095 * 125.57868 * 179.97438 * 3 2 1 5 5 C 1.39911 * 107.17465 * 180.02562 * 4 3 2 6 6 C 1.37826 * 106.67894 * 0.02562 * 5 4 3 7 7 C 1.46135 * 126.03255 * 179.97438 * 6 5 4 8 8 O 1.21770 * 119.99679 * 353.21817 * 7 6 5 9 9 N 1.34775 * 119.99883 * 173.22308 * 7 6 5 10 10 C 1.46493 * 120.00192 * 3.35355 * 9 7 6 11 11 C 1.46509 * 119.99669 * 183.35505 * 9 7 6 12 12 C 1.50691 * 109.46941 * 89.99795 * 11 9 7 13 13 H 1.07997 * 120.00473 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99553 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99676 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47217 * 60.00610 * 16 14 12 18 18 H 1.48505 * 109.47001 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47403 * 300.00169 * 16 14 12 20 20 O 1.34012 * 125.57999 * 0.02562 * 3 2 1 21 21 H 1.08998 * 109.46679 * 299.99992 * 1 2 3 22 22 H 1.09006 * 109.46601 * 59.99544 * 1 2 3 23 23 H 1.08993 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.07997 * 126.41447 * 0.26638 * 4 3 2 25 25 H 1.07999 * 126.66251 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.47356 * 84.01441 * 10 9 7 27 27 H 1.09003 * 109.47167 * 204.01570 * 10 9 7 28 28 H 1.09003 * 109.47350 * 324.01132 * 10 9 7 29 29 H 1.09000 * 109.46871 * 209.99882 * 11 9 7 30 30 H 1.09002 * 109.47085 * 329.99654 * 11 9 7 31 31 H 0.96996 * 120.00107 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2061 0.0000 4 6 3.3894 1.4090 0.0005 5 6 3.5986 2.7924 0.0009 6 6 2.3523 3.3809 0.0012 7 6 2.0796 4.8166 0.0022 8 8 2.9948 5.6101 0.1274 9 7 0.8152 5.2624 -0.1353 10 6 -0.2937 4.3082 -0.2120 11 6 0.5497 6.7014 -0.2082 12 6 0.5962 7.1486 -1.6465 13 1 0.8032 6.4327 -2.4281 14 6 0.3744 8.4718 -1.9645 15 7 0.1229 9.3436 -1.0126 16 14 0.4327 9.0262 -3.7474 17 1 -0.5958 8.2925 -4.5279 18 1 0.1636 10.4848 -3.8213 19 1 1.7773 8.7423 -4.3104 20 8 1.4266 2.3957 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 4.1529 0.6453 -0.0031 25 1 4.5516 3.3005 0.0017 26 1 -0.5984 4.0235 0.7951 27 1 -1.1350 4.7696 -0.7293 28 1 0.0270 3.4216 -0.7589 29 1 -0.4368 6.9103 0.2056 30 1 1.3052 7.2397 0.3643 31 1 -0.0335 10.2744 -1.2364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594256998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:10 Heat of formation + Delta-G solvation = -49.156530 kcal Electronic energy + Delta-G solvation = -16983.117936 eV Core-core repulsion = 14039.524813 eV Total energy + Delta-G solvation = -2943.593123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60641 -38.95040 -38.28836 -35.02921 -33.05606 -32.58868 -29.66726 -28.00755 -27.07071 -25.76989 -23.49860 -21.86144 -21.46469 -19.49414 -18.40351 -17.06916 -16.68671 -16.50985 -15.64844 -15.21665 -15.12782 -14.33961 -14.06943 -13.47064 -13.15529 -13.05536 -12.59166 -12.46716 -12.31777 -12.13059 -11.68979 -11.58734 -11.20550 -10.91137 -10.58392 -10.19610 -9.87043 -9.70260 -9.36157 -8.45799 -8.03814 -7.65794 -6.06917 -4.12424 1.36062 2.32565 2.51449 3.16985 3.31312 3.35701 3.38879 3.76659 3.95897 4.43163 4.82251 4.91383 4.93065 5.10483 5.20156 5.27808 5.53700 5.70142 5.83313 5.91610 5.92815 6.21643 6.44743 6.56189 7.01696 7.19022 7.36769 7.45758 7.88732 8.18133 8.27306 8.79009 8.95892 9.52648 11.01101 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.005928 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.862985 B = 4722.544935 C = 4942.649828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.267 6.267 3 C 0.187 3.813 4 C -0.237 4.237 5 C -0.103 4.103 6 C -0.075 4.075 7 C 0.590 3.410 8 O -0.521 6.521 9 N -0.590 5.590 10 C 0.082 3.918 11 C 0.244 3.756 12 C -0.531 4.531 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.275 1.275 20 O -0.181 6.181 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.107 0.893 24 H 0.158 0.842 25 H 0.165 0.835 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -17.374 2.297 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.181 6.181 3 C 0.091 3.909 4 C -0.257 4.257 5 C -0.124 4.124 6 C -0.126 4.126 7 C 0.376 3.624 8 O -0.400 6.400 9 N -0.321 5.321 10 C -0.062 4.062 11 C 0.126 3.874 12 C -0.570 4.570 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 O -0.081 6.081 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.125 0.875 24 H 0.176 0.824 25 H 0.182 0.818 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.498 -16.843 2.400 17.020 hybrid contribution -0.293 0.199 -1.029 1.088 sum -0.791 -16.644 1.371 16.719 Atomic orbital electron populations 1.23137 0.76985 1.04562 1.02758 1.86358 1.22851 1.19336 1.89596 1.20889 0.89749 0.78731 1.01505 1.20695 0.91964 0.96813 1.16255 1.21922 0.97963 0.92347 1.00128 1.22615 0.86800 0.87867 1.15306 1.16478 0.84035 0.83184 0.78668 1.90871 1.44105 1.53425 1.51617 1.48105 1.04774 1.10098 1.69079 1.21808 0.90924 0.92780 1.00643 1.19411 0.97593 0.72623 0.97805 1.21390 1.49096 0.94093 0.92409 0.92385 1.24931 0.94937 0.96317 0.97783 1.69918 1.47887 1.03233 1.32203 0.86532 0.78690 0.77468 0.84584 1.20241 1.21095 1.20082 1.84299 1.37234 1.13967 1.72611 0.91858 0.91814 0.87507 0.82432 0.81789 0.93651 0.90292 0.91628 0.94562 0.93369 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.74 101.05 1.09 1.25 16 2 O -0.27 -3.11 10.55 -41.02 -0.43 -3.55 16 3 C 0.19 2.61 7.86 29.96 0.24 2.84 16 4 C -0.24 -3.23 10.89 -39.73 -0.43 -3.66 16 5 C -0.10 -1.63 10.67 -39.11 -0.42 -2.05 16 6 C -0.08 -1.38 6.79 -36.57 -0.25 -1.62 16 7 C 0.59 13.26 7.62 -13.09 -0.10 13.16 16 8 O -0.52 -13.50 16.44 5.13 0.08 -13.42 16 9 N -0.59 -13.20 2.86 -184.71 -0.53 -13.73 16 10 C 0.08 1.41 9.62 59.84 0.58 1.99 16 11 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 12 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 O -0.18 -2.83 6.76 -19.26 -0.13 -2.96 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 28 H 0.07 1.04 5.40 -51.93 -0.28 0.76 16 29 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 30 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 278.62 15.07 4.20 4.20 Total: -1.00 -32.86 278.62 -4.42 -37.28 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.58 Total: -3.47 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 0.25 Total: 4.56 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.21 Total: -39.47 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.48 Total: -19.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.86 -4.42 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594256998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.875 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds