Wall clock time and date at job start Thu Apr 9 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48496 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 299.99907 * 3 2 1 6 6 H 1.48501 * 109.47180 * 59.99756 * 3 2 1 7 7 C 1.38943 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 199.39161 * 7 2 1 9 9 N 1.37094 * 120.00137 * 19.39680 * 7 2 1 10 10 C 1.34772 * 120.00327 * 42.73377 * 9 7 2 11 11 O 1.21296 * 119.99665 * 359.72755 * 10 9 7 12 12 C 1.50702 * 120.00229 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.55051 * 34.05110 * 12 10 9 14 14 C 1.53002 * 117.49580 * 248.34452 * 12 10 9 15 15 C 1.53001 * 117.49935 * 179.72312 * 12 10 9 16 16 H 1.09004 * 117.49910 * 359.97438 * 15 12 10 17 17 C 1.50697 * 117.49738 * 214.97609 * 15 12 10 18 18 O 1.20820 * 120.00402 * 359.97438 * 17 15 12 19 19 O 1.34235 * 119.99460 * 180.02562 * 17 15 12 20 20 C 1.46509 * 119.99815 * 222.73846 * 9 7 2 21 21 C 1.52997 * 117.49924 * 3.23843 * 20 9 7 22 22 C 1.52996 * 117.49286 * 294.61649 * 20 9 7 23 23 H 0.97005 * 120.00113 * 354.86886 * 1 2 3 24 24 H 1.09000 * 117.49716 * 0.02562 * 14 12 10 25 25 H 1.08998 * 117.49944 * 145.01816 * 14 12 10 26 26 H 0.96701 * 116.99640 * 179.97438 * 19 17 15 27 27 H 1.08997 * 115.54974 * 148.95176 * 20 9 7 28 28 H 1.09006 * 117.50056 * 0.02562 * 21 20 9 29 29 H 1.08998 * 117.50067 * 145.02613 * 21 20 9 30 30 H 1.09006 * 117.49828 * 214.97664 * 22 20 9 31 31 H 1.09000 * 117.50216 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0428 -1.2297 0.3111 9 7 1.3817 -2.3571 -0.3932 10 6 0.5799 -2.3523 -1.4765 11 8 0.4092 -1.3260 -2.1001 12 6 -0.1099 -3.6205 -1.9090 13 1 -0.4114 -4.2899 -1.1034 14 6 0.3417 -4.2567 -3.2251 15 6 -1.0121 -3.5485 -3.1426 16 1 -1.1071 -2.5838 -3.6412 17 6 -2.2492 -4.4091 -3.1511 18 8 -2.4964 -5.1209 -2.2066 19 8 -3.0758 -4.3855 -4.2084 20 6 1.5831 -3.5952 0.3636 21 6 2.4434 -3.5192 1.6265 22 6 2.9889 -4.1990 0.3690 23 1 -0.4850 0.8367 0.0751 24 1 1.1379 -3.7582 -3.7779 25 1 0.3375 -5.3450 -3.2856 26 1 -3.8564 -4.9550 -4.1681 27 1 0.7391 -4.2849 0.3699 28 1 2.8593 -2.5479 1.8945 29 1 2.1655 -4.1589 2.4641 30 1 3.0698 -5.2860 0.3794 31 1 3.7639 -3.6749 -0.1902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739075797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:11 Heat of formation + Delta-G solvation = -57.117666 kcal Electronic energy + Delta-G solvation = -17235.526483 eV Core-core repulsion = 14291.588139 eV Total energy + Delta-G solvation = -2943.938344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26826 -38.72663 -36.74365 -35.94084 -35.02851 -32.72235 -30.89098 -26.23462 -24.87973 -22.86156 -21.69301 -21.14786 -20.54468 -18.78225 -18.14459 -17.09253 -16.09168 -15.88109 -15.42818 -14.68045 -14.50845 -13.86951 -13.69093 -13.36669 -12.88568 -12.35756 -12.02293 -11.66428 -11.44740 -11.03110 -10.93499 -10.88652 -10.75336 -10.44982 -10.23123 -10.20386 -10.03808 -9.91352 -9.71119 -8.75408 -8.07992 -7.06092 -6.12951 -3.87682 2.27162 3.09592 3.29172 3.38514 3.40699 3.71831 4.24240 4.38811 4.70164 4.81794 5.03958 5.16529 5.32570 5.45919 5.56253 5.62431 5.78555 5.83687 5.85849 6.03996 6.23928 6.28754 6.44217 6.47202 6.59973 6.76164 6.93304 7.60256 8.05987 8.24001 9.02453 9.12314 9.62943 10.25519 10.95693 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.008427 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.771083 B = 3321.807601 C = 4086.662747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.418 5.418 10 C 0.505 3.495 11 O -0.531 6.531 12 C -0.129 4.129 13 H 0.122 0.878 14 C -0.125 4.125 15 C -0.151 4.151 16 H 0.145 0.855 17 C 0.514 3.486 18 O -0.519 6.519 19 O -0.513 6.513 20 C 0.074 3.926 21 C -0.175 4.175 22 C -0.205 4.205 23 H 0.264 0.736 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.406 0.594 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -9.100 -3.691 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.139 4.139 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.477 4.477 8 H 0.098 0.902 9 N -0.138 5.138 10 C 0.292 3.708 11 O -0.409 6.409 12 C -0.151 4.151 13 H 0.140 0.860 14 C -0.163 4.163 15 C -0.170 4.170 16 H 0.163 0.837 17 C 0.357 3.643 18 O -0.407 6.407 19 O -0.324 6.324 20 C -0.032 4.032 21 C -0.213 4.213 22 C -0.244 4.244 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.264 0.736 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.336 -8.354 -3.833 9.198 hybrid contribution -0.370 0.336 0.232 0.551 sum -0.706 -8.018 -3.601 8.818 Atomic orbital electron populations 1.69857 1.06623 1.27428 1.42181 1.25246 0.94809 0.99459 0.94344 0.86144 0.79800 0.82545 0.77517 1.19538 1.20625 1.21172 1.18922 0.95219 0.83948 1.49580 0.90169 1.42640 1.43502 1.06273 1.21379 1.18708 0.83209 0.87156 0.81707 1.90536 1.62645 1.32823 1.54857 1.22519 0.99956 1.00707 0.91868 0.86043 1.22970 0.94282 0.99492 0.99557 1.21606 0.87203 1.01285 1.06906 0.83710 1.22503 0.83393 0.79545 0.78816 1.90685 1.73901 1.40367 1.35796 1.84547 1.37535 1.65731 1.44595 1.21738 0.92667 0.91150 0.97637 1.23081 1.04504 1.02615 0.91059 1.23303 0.99611 0.98730 1.02773 0.92551 0.86963 0.88101 0.73602 0.87791 0.87483 0.89751 0.89740 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.62 11.67 55.50 0.65 -23.98 16 2 C 0.07 2.03 4.34 -17.47 -0.08 1.96 16 3 Si 0.91 21.79 29.60 -169.99 -5.03 16.76 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.35 -9.49 7.99 -14.94 -0.12 -9.61 16 8 H 0.08 2.09 7.19 -52.49 -0.38 1.72 16 9 N -0.42 -10.46 2.85 -107.73 -0.31 -10.76 16 10 C 0.51 12.75 6.76 -10.99 -0.07 12.68 16 11 O -0.53 -15.39 13.90 5.54 0.08 -15.31 16 12 C -0.13 -2.56 4.83 -91.77 -0.44 -3.00 16 13 H 0.12 2.36 6.11 -51.93 -0.32 2.04 16 14 C -0.13 -1.97 9.94 -26.73 -0.27 -2.23 16 15 C -0.15 -2.67 5.81 -91.77 -0.53 -3.20 16 16 H 0.15 2.74 7.67 -51.93 -0.40 2.34 16 17 C 0.51 8.38 8.11 36.00 0.29 8.67 16 18 O -0.52 -9.61 17.02 -18.75 -0.32 -9.93 16 19 O -0.51 -6.53 13.42 -39.27 -0.53 -7.06 16 20 C 0.07 1.50 5.90 -67.93 -0.40 1.10 16 21 C -0.17 -3.16 9.79 -26.73 -0.26 -3.42 16 22 C -0.21 -3.48 10.36 -26.73 -0.28 -3.76 16 23 H 0.26 7.50 8.32 -40.82 -0.34 7.17 16 24 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 25 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.41 3.10 9.10 45.56 0.41 3.52 16 27 H 0.10 1.94 6.47 -51.93 -0.34 1.60 16 28 H 0.11 2.12 6.69 -51.93 -0.35 1.78 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -34.17 275.87 -6.07 -40.24 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.61 Total: 6.70 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.16 Total: -0.83 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.34 Total: -34.74 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.77 Total: -32.30 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.17 -6.07 -40.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.875 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds