Wall clock time and date at job start Thu Apr 9 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48496 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 299.99907 * 3 2 1 6 6 H 1.48501 * 109.47180 * 59.99756 * 3 2 1 7 7 C 1.38943 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 199.39161 * 7 2 1 9 9 N 1.37094 * 120.00137 * 19.39680 * 7 2 1 10 10 C 1.34772 * 120.00327 * 42.73377 * 9 7 2 11 11 O 1.21296 * 119.99665 * 359.72755 * 10 9 7 12 12 C 1.50702 * 120.00229 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.55051 * 34.05110 * 12 10 9 14 14 C 1.53002 * 117.49580 * 248.34452 * 12 10 9 15 15 C 1.53001 * 117.49935 * 179.72312 * 12 10 9 16 16 H 1.09004 * 117.49910 * 359.97438 * 15 12 10 17 17 C 1.50697 * 117.49738 * 214.97609 * 15 12 10 18 18 O 1.20820 * 120.00402 * 359.97438 * 17 15 12 19 19 O 1.34235 * 119.99460 * 180.02562 * 17 15 12 20 20 C 1.46509 * 119.99815 * 222.73846 * 9 7 2 21 21 C 1.52997 * 117.49924 * 3.23843 * 20 9 7 22 22 C 1.52996 * 117.49286 * 294.61649 * 20 9 7 23 23 H 0.97005 * 120.00113 * 354.86886 * 1 2 3 24 24 H 1.09000 * 117.49716 * 0.02562 * 14 12 10 25 25 H 1.08998 * 117.49944 * 145.01816 * 14 12 10 26 26 H 0.96701 * 116.99640 * 179.97438 * 19 17 15 27 27 H 1.08997 * 115.54974 * 148.95176 * 20 9 7 28 28 H 1.09006 * 117.50056 * 0.02562 * 21 20 9 29 29 H 1.08998 * 117.50067 * 145.02613 * 21 20 9 30 30 H 1.09006 * 117.49828 * 214.97664 * 22 20 9 31 31 H 1.09000 * 117.50216 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0428 -1.2297 0.3111 9 7 1.3817 -2.3571 -0.3932 10 6 0.5799 -2.3523 -1.4765 11 8 0.4092 -1.3260 -2.1001 12 6 -0.1099 -3.6205 -1.9090 13 1 -0.4114 -4.2899 -1.1034 14 6 0.3417 -4.2567 -3.2251 15 6 -1.0121 -3.5485 -3.1426 16 1 -1.1071 -2.5838 -3.6412 17 6 -2.2492 -4.4091 -3.1511 18 8 -2.4964 -5.1209 -2.2066 19 8 -3.0758 -4.3855 -4.2084 20 6 1.5831 -3.5952 0.3636 21 6 2.4434 -3.5192 1.6265 22 6 2.9889 -4.1990 0.3690 23 1 -0.4850 0.8367 0.0751 24 1 1.1379 -3.7582 -3.7779 25 1 0.3375 -5.3450 -3.2856 26 1 -3.8564 -4.9550 -4.1681 27 1 0.7391 -4.2849 0.3699 28 1 2.8593 -2.5479 1.8945 29 1 2.1655 -4.1589 2.4641 30 1 3.0698 -5.2860 0.3794 31 1 3.7639 -3.6749 -0.1902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:09 Heat of formation + Delta-G solvation = -80.879280 kcal Electronic energy + Delta-G solvation = -17236.556864 eV Core-core repulsion = 14291.588139 eV Total energy + Delta-G solvation = -2944.968725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59675 -40.41146 -38.21966 -37.29718 -36.56755 -34.68108 -32.81694 -28.02280 -26.40497 -24.49367 -23.10650 -22.74769 -21.91165 -20.52832 -19.48240 -18.52228 -17.90560 -17.44412 -16.69540 -16.58616 -16.15082 -15.53449 -15.25031 -14.93673 -14.51913 -13.98579 -13.55445 -13.26788 -12.90038 -12.78143 -12.71159 -12.60120 -12.23484 -12.04993 -11.83654 -11.69141 -11.60369 -11.49287 -11.18875 -10.75002 -10.00042 -9.00048 -8.21412 -5.98827 0.99062 1.35963 1.43710 1.51923 1.86371 2.12369 2.34197 2.86530 3.05261 3.12066 3.37651 3.59516 3.88794 3.96072 4.11266 4.30183 4.33098 4.38715 4.46014 4.65825 4.91534 4.93699 5.01752 5.06089 5.30008 5.46673 5.50859 5.52611 6.18458 6.97254 7.01135 7.17303 7.67450 8.33044 8.87341 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.008427 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.771083 B = 3321.807601 C = 4086.662747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.357 4.357 8 H 0.083 0.917 9 N -0.435 5.435 10 C 0.492 3.508 11 O -0.584 6.584 12 C -0.148 4.148 13 H 0.127 0.873 14 C -0.086 4.086 15 C -0.156 4.156 16 H 0.126 0.874 17 C 0.526 3.474 18 O -0.543 6.543 19 O -0.502 6.502 20 C 0.041 3.959 21 C -0.173 4.173 22 C -0.173 4.173 23 H 0.259 0.741 24 H 0.115 0.885 25 H 0.139 0.861 26 H 0.431 0.569 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -11.194 -3.936 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.187 4.187 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.101 0.899 9 N -0.154 5.154 10 C 0.281 3.719 11 O -0.466 6.466 12 C -0.170 4.170 13 H 0.145 0.855 14 C -0.124 4.124 15 C -0.176 4.176 16 H 0.144 0.856 17 C 0.370 3.630 18 O -0.434 6.434 19 O -0.316 6.316 20 C -0.064 4.064 21 C -0.211 4.211 22 C -0.211 4.211 23 H 0.069 0.931 24 H 0.133 0.867 25 H 0.157 0.843 26 H 0.293 0.707 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.426 -10.492 -4.063 11.259 hybrid contribution -0.605 0.909 0.267 1.124 sum -0.179 -9.583 -3.795 10.308 Atomic orbital electron populations 1.69977 1.08205 1.27644 1.44785 1.26100 0.95483 1.02813 0.94319 0.85221 0.79358 0.78616 0.77072 1.17877 1.22131 1.19957 1.19196 0.95508 0.85198 1.48491 0.89897 1.42883 1.43256 1.07313 1.21955 1.19549 0.82802 0.88317 0.81230 1.90486 1.64455 1.35148 1.56496 1.22214 1.02215 0.98949 0.93582 0.85535 1.23128 0.92720 1.01322 0.95206 1.21554 0.89256 1.01526 1.05285 0.85573 1.22049 0.83166 0.78747 0.78997 1.90683 1.74463 1.41443 1.36784 1.84478 1.38197 1.66114 1.42783 1.22011 0.95075 0.90077 0.99242 1.23144 1.03586 1.02404 0.91942 1.23314 0.96383 1.00711 1.00720 0.93140 0.86696 0.84334 0.70672 0.86325 0.89861 0.86634 0.85703 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.80 11.67 21.66 0.25 -53.55 16 2 C 0.02 1.10 4.34 84.92 0.37 1.46 16 3 Si 0.97 45.82 29.60 68.60 2.03 47.85 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.36 -19.67 7.99 84.04 0.67 -19.00 16 8 H 0.08 4.38 7.19 -2.91 -0.02 4.36 16 9 N -0.44 -21.97 2.85 -613.14 -1.74 -23.72 16 10 C 0.49 25.33 6.76 87.66 0.59 25.93 16 11 O -0.58 -35.18 13.90 -3.08 -0.04 -35.22 16 12 C -0.15 -5.80 4.83 -11.54 -0.06 -5.85 16 13 H 0.13 4.79 6.11 -2.39 -0.01 4.77 16 14 C -0.09 -2.51 9.94 30.60 0.30 -2.21 16 15 C -0.16 -5.42 5.81 -11.54 -0.07 -5.49 16 16 H 0.13 4.88 7.67 -2.39 -0.02 4.86 16 17 C 0.53 16.19 8.11 71.23 0.58 16.76 16 18 O -0.54 -19.10 17.02 21.98 0.37 -18.73 16 19 O -0.50 -11.51 13.42 -51.46 -0.69 -12.20 16 20 C 0.04 1.60 5.90 44.99 0.27 1.86 16 21 C -0.17 -5.94 9.79 30.59 0.30 -5.64 16 22 C -0.17 -5.37 10.36 30.59 0.32 -5.05 16 23 H 0.26 15.40 8.32 -92.70 -0.77 14.63 16 24 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 25 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.43 5.26 9.10 -74.06 -0.67 4.58 16 27 H 0.12 4.23 6.47 -2.39 -0.02 4.22 16 28 H 0.08 3.26 6.69 -2.38 -0.02 3.25 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -76.84 275.87 3.95 -72.89 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.49 Total: 19.91 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 3.27 Total: 2.78 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.49 Total: -77.27 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -0.36 Total: -66.15 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -76.84 3.95 -72.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.991 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds