Wall clock time and date at job start Thu Apr 9 2020 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48503 * 109.46799 * 269.99501 * 3 2 1 5 5 H 1.48493 * 109.47512 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.47188 * 150.00108 * 3 2 1 7 7 C 1.38950 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99984 * 212.63386 * 7 2 1 9 9 N 1.37096 * 119.99965 * 32.63562 * 7 2 1 10 10 C 1.34780 * 120.00331 * 43.53296 * 9 7 2 11 11 O 1.21297 * 119.99251 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00450 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.55169 * 316.04571 * 12 10 9 14 14 C 1.53004 * 117.50025 * 170.37523 * 12 10 9 15 15 C 1.52997 * 117.50043 * 101.75211 * 12 10 9 16 16 H 1.09001 * 117.50186 * 214.97698 * 15 12 10 17 17 C 1.50700 * 117.49874 * 0.02562 * 15 12 10 18 18 O 1.20821 * 120.00255 * 48.33894 * 17 15 12 19 19 O 1.34229 * 120.00095 * 228.34013 * 17 15 12 20 20 C 1.46498 * 120.00058 * 223.52821 * 9 7 2 21 21 C 1.52999 * 117.49986 * 2.95054 * 20 9 7 22 22 C 1.53004 * 117.50183 * 294.28986 * 20 9 7 23 23 H 0.96993 * 119.99578 * 4.66611 * 1 2 3 24 24 H 1.09000 * 117.49460 * 359.97438 * 14 12 10 25 25 H 1.08993 * 117.49849 * 145.02347 * 14 12 10 26 26 H 0.96707 * 116.99961 * 179.97438 * 19 17 15 27 27 H 1.09010 * 115.55007 * 148.62125 * 20 9 7 28 28 H 1.08998 * 117.49756 * 0.02562 * 21 20 9 29 29 H 1.09006 * 117.50018 * 145.01672 * 21 20 9 30 30 H 1.08995 * 117.50281 * 214.97667 * 22 20 9 31 31 H 1.08996 * 117.49505 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 2.9610 -1.2770 0.5050 9 7 1.4857 -2.2972 -0.6393 10 6 0.9291 -2.1620 -1.8593 11 8 0.8906 -1.0725 -2.3909 12 6 0.3535 -3.3642 -2.5623 13 1 0.9615 -4.2680 -2.5223 14 6 -0.4609 -3.1164 -3.8337 15 6 -1.1669 -3.5337 -2.5421 16 1 -1.5595 -4.5491 -2.4886 17 6 -1.9744 -2.4852 -1.8211 18 8 -1.7677 -1.3135 -2.0307 19 8 -2.9232 -2.8532 -0.9458 20 6 1.5318 -3.6130 0.0031 21 6 2.1139 -3.6895 1.4160 22 6 2.9086 -4.2408 0.2296 23 1 -0.4849 0.8372 -0.0683 24 1 -0.5806 -2.0837 -4.1613 25 1 -0.3890 -3.8573 -4.6298 26 1 -3.4148 -2.1449 -0.5076 27 1 0.7067 -4.2832 -0.2383 28 1 2.4621 -2.7607 1.8677 29 1 1.6719 -4.4101 2.1041 30 1 2.9892 -5.3239 0.1377 31 1 3.7801 -3.6750 -0.0998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:16 Heat of formation + Delta-G solvation = -78.559574 kcal Electronic energy + Delta-G solvation = -17974.724014 eV Core-core repulsion = 15029.855879 eV Total energy + Delta-G solvation = -2944.868135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.46579 -40.12620 -38.12587 -37.05354 -36.41096 -34.68045 -32.78901 -27.78717 -26.39317 -24.49584 -23.04519 -22.64524 -21.54539 -20.64242 -19.28890 -18.35032 -17.81910 -17.03112 -16.55544 -16.41391 -15.99438 -15.71159 -15.25325 -14.75960 -14.50279 -13.86054 -13.68651 -13.11331 -12.95518 -12.77055 -12.58156 -12.32961 -12.20672 -12.10447 -11.65341 -11.55586 -11.46341 -11.28382 -11.16292 -10.58662 -9.93492 -9.06932 -8.21148 -5.90186 1.26902 1.32365 1.43383 1.44045 2.17103 2.22384 2.36214 2.87054 3.09630 3.21840 3.41541 3.80082 3.86575 3.98506 4.18950 4.30981 4.36805 4.43665 4.57736 4.83982 4.92444 4.93251 5.07967 5.21613 5.32371 5.48872 5.52420 5.84724 6.19213 7.05287 7.21497 7.25624 7.73494 8.37804 8.78888 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.012767 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.214495 B = 2192.671154 C = 2847.134838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.048 3.952 3 Si 0.939 3.061 4 H -0.299 1.299 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.435 5.435 10 C 0.487 3.513 11 O -0.581 6.581 12 C -0.153 4.153 13 H 0.165 0.835 14 C -0.109 4.109 15 C -0.141 4.141 16 H 0.179 0.821 17 C 0.476 3.524 18 O -0.507 6.507 19 O -0.516 6.516 20 C 0.045 3.955 21 C -0.175 4.175 22 C -0.175 4.175 23 H 0.253 0.747 24 H 0.074 0.926 25 H 0.163 0.837 26 H 0.417 0.583 27 H 0.125 0.875 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -13.228 -1.966 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.226 1.226 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.091 0.909 9 N -0.155 5.155 10 C 0.276 3.724 11 O -0.463 6.463 12 C -0.174 4.174 13 H 0.182 0.818 14 C -0.146 4.146 15 C -0.160 4.160 16 H 0.197 0.803 17 C 0.318 3.682 18 O -0.394 6.394 19 O -0.330 6.330 20 C -0.060 4.060 21 C -0.213 4.213 22 C -0.214 4.214 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.181 0.819 26 H 0.276 0.724 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.951 -12.526 -2.382 12.899 hybrid contribution -0.083 2.019 0.521 2.086 sum -2.034 -10.507 -1.861 10.863 Atomic orbital electron populations 1.70097 1.07584 1.27691 1.40825 1.25696 0.94859 1.01790 0.93858 0.85818 0.79911 0.80763 0.77040 1.22624 1.21162 1.17963 1.18804 1.02877 0.89847 1.38436 0.90945 1.42918 1.53890 1.05740 1.13002 1.19872 0.81921 0.89047 0.81536 1.90512 1.59179 1.29682 1.66893 1.22505 0.91890 1.00250 1.02740 0.81807 1.23138 0.97589 1.03714 0.90194 1.21879 0.91852 0.99934 1.02321 0.80342 1.22867 0.78497 0.89163 0.77696 1.90897 1.64771 1.21417 1.62268 1.84350 1.48563 1.45354 1.54699 1.22007 0.97360 0.88023 0.98593 1.23091 1.04360 1.02570 0.91249 1.23337 0.94699 1.01151 1.02181 0.93732 0.90732 0.81931 0.72369 0.85714 0.90611 0.86649 0.85285 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.36 12.45 21.66 0.27 -51.09 16 2 C 0.05 2.85 3.88 84.93 0.33 3.18 16 3 Si 0.94 48.36 29.66 68.60 2.03 50.39 16 4 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.37 -21.19 7.84 84.04 0.66 -20.53 16 8 H 0.07 4.04 7.32 -2.91 -0.02 4.02 16 9 N -0.44 -21.88 2.84 -613.12 -1.74 -23.62 16 10 C 0.49 24.71 5.52 87.65 0.48 25.20 16 11 O -0.58 -35.76 13.40 13.46 0.18 -35.58 16 12 C -0.15 -5.35 4.69 -11.54 -0.05 -5.41 16 13 H 0.16 4.29 7.78 -2.39 -0.02 4.27 16 14 C -0.11 -3.33 9.56 30.60 0.29 -3.04 16 15 C -0.14 -4.34 6.30 -11.54 -0.07 -4.41 16 16 H 0.18 3.62 8.14 -2.39 -0.02 3.60 16 17 C 0.48 19.21 7.59 71.24 0.54 19.75 16 18 O -0.51 -26.29 14.81 27.73 0.41 -25.88 16 19 O -0.52 -17.21 13.42 -51.40 -0.69 -17.90 16 20 C 0.04 1.71 5.70 44.99 0.26 1.96 16 21 C -0.18 -6.07 9.80 30.62 0.30 -5.77 16 22 C -0.18 -5.37 10.37 30.62 0.32 -5.05 16 23 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 24 H 0.07 2.97 7.38 -2.39 -0.02 2.95 16 25 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 26 H 0.42 11.71 9.10 -74.05 -0.67 11.04 16 27 H 0.13 4.08 7.29 -2.38 -0.02 4.06 16 28 H 0.08 3.11 6.70 -2.39 -0.02 3.10 16 29 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -82.99 273.76 4.00 -78.98 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.49 Total: 18.81 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 3.05 Total: 5.88 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.47 Total: -74.71 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -0.10 Total: -79.36 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -82.99 4.00 -78.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.423 kcal (2) G-P(sol) polarization free energy of solvation -82.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds