Wall clock time and date at job start Thu Apr 9 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47225 * 300.00115 * 3 2 1 6 6 H 1.48504 * 109.47088 * 59.99949 * 3 2 1 7 7 C 1.38946 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00404 * 198.03513 * 7 2 1 9 9 N 1.37095 * 120.00099 * 18.03723 * 7 2 1 10 10 C 1.34777 * 120.00408 * 44.45659 * 9 7 2 11 11 O 1.21298 * 119.99349 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00541 * 180.02562 * 10 9 7 13 13 H 1.09002 * 115.54527 * 325.72748 * 12 10 9 14 14 C 1.53001 * 117.49496 * 111.38969 * 12 10 9 15 15 C 1.53007 * 60.02870 * 107.48248 * 14 12 10 16 16 H 1.08999 * 117.49473 * 252.51767 * 15 14 12 17 17 C 1.50702 * 117.49893 * 107.50056 * 15 14 12 18 18 O 1.20821 * 119.99915 * 291.39208 * 17 15 14 19 19 O 1.34225 * 119.99891 * 111.39061 * 17 15 14 20 20 C 1.46505 * 119.99798 * 224.45887 * 9 7 2 21 21 C 1.52998 * 117.50120 * 3.28435 * 20 9 7 22 22 C 1.52995 * 117.50043 * 294.61933 * 20 9 7 23 23 H 0.96998 * 120.00251 * 354.95606 * 1 2 3 24 24 H 1.09008 * 117.49695 * 214.97915 * 14 12 10 25 25 H 1.08998 * 117.50376 * 359.97438 * 14 12 10 26 26 H 0.96698 * 116.99978 * 180.02562 * 19 17 15 27 27 H 1.09007 * 115.54523 * 148.95140 * 20 9 7 28 28 H 1.09006 * 117.49606 * 359.97438 * 21 20 9 29 29 H 1.09000 * 117.49606 * 145.01672 * 21 20 9 30 30 H 1.09001 * 117.49919 * 214.97613 * 22 20 9 31 31 H 1.09000 * 117.50140 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0491 -1.2265 0.2890 9 7 1.3740 -2.3613 -0.3687 10 6 0.5773 -2.3768 -1.4557 11 8 0.4224 -1.3663 -2.1085 12 6 -0.1211 -3.6495 -1.8600 13 1 0.4320 -4.5696 -1.6710 14 6 -1.6433 -3.6973 -1.7131 15 6 -1.0122 -3.6022 -3.1037 16 1 -1.0930 -2.6505 -3.6290 17 6 -1.0582 -4.8314 -3.9743 18 8 -0.4065 -5.8052 -3.6796 19 8 -1.8232 -4.8444 -5.0771 20 6 1.5615 -3.5819 0.4196 21 6 2.4156 -3.4815 1.6849 22 6 2.9621 -4.1970 0.4469 23 1 -0.4850 0.8368 0.0739 24 1 -2.0918 -4.6490 -1.4280 25 1 -2.1396 -2.8084 -1.3236 26 1 -1.8206 -5.6555 -5.6037 27 1 0.7116 -4.2642 0.4388 28 1 2.8384 -2.5073 1.9308 29 1 2.1279 -4.0980 2.5365 30 1 3.0337 -5.2840 0.4847 31 1 3.7440 -3.6938 -0.1219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739075803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:20 Heat of formation + Delta-G solvation = -59.088104 kcal Electronic energy + Delta-G solvation = -17233.352271 eV Core-core repulsion = 14289.328483 eV Total energy + Delta-G solvation = -2944.023789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28640 -38.72502 -36.73177 -35.95926 -35.01699 -32.73708 -30.88344 -26.23681 -24.86185 -22.87194 -21.64719 -21.10495 -20.56397 -18.81160 -18.14773 -17.06391 -16.09382 -15.87605 -15.44440 -14.71944 -14.45069 -13.99120 -13.55398 -13.35792 -12.93814 -12.38989 -11.93848 -11.60888 -11.43997 -11.08034 -10.94365 -10.90404 -10.76245 -10.48365 -10.24895 -10.17135 -9.95989 -9.93858 -9.72056 -8.74268 -8.09911 -7.05706 -6.14354 -3.89556 2.24660 3.07827 3.28086 3.38507 3.40187 3.71298 4.20793 4.41138 4.75398 4.81357 5.06225 5.20488 5.36463 5.41155 5.56719 5.63610 5.77188 5.80156 5.94352 6.14883 6.25960 6.33550 6.40343 6.49902 6.57859 6.76755 6.94357 7.60377 8.03388 8.24879 9.02841 9.11526 9.62246 10.24752 10.94860 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.025245 B = 0.008264 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.858576 B = 3387.203699 C = 4141.360908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.079 0.921 9 N -0.420 5.420 10 C 0.510 3.490 11 O -0.531 6.531 12 C -0.134 4.134 13 H 0.123 0.877 14 C -0.122 4.122 15 C -0.151 4.151 16 H 0.145 0.855 17 C 0.514 3.486 18 O -0.520 6.520 19 O -0.512 6.512 20 C 0.075 3.925 21 C -0.173 4.173 22 C -0.208 4.208 23 H 0.264 0.736 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.406 0.594 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -8.621 -2.193 9.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.474 4.474 8 H 0.097 0.903 9 N -0.140 5.140 10 C 0.296 3.704 11 O -0.409 6.409 12 C -0.155 4.155 13 H 0.141 0.859 14 C -0.160 4.160 15 C -0.170 4.170 16 H 0.163 0.837 17 C 0.357 3.643 18 O -0.408 6.408 19 O -0.324 6.324 20 C -0.031 4.031 21 C -0.211 4.211 22 C -0.247 4.247 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.136 0.864 26 H 0.264 0.736 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.342 -7.847 -2.279 8.500 hybrid contribution 0.364 0.117 -0.292 0.481 sum -1.978 -7.730 -2.572 8.383 Atomic orbital electron populations 1.69820 1.06545 1.27343 1.42937 1.25249 0.94881 0.99415 0.94204 0.86134 0.79831 0.82504 0.77495 1.19562 1.20634 1.21156 1.18915 0.94506 0.83681 1.50321 0.90306 1.42614 1.43569 1.07001 1.20841 1.18732 0.83016 0.86988 0.81625 1.90535 1.62868 1.34154 1.53348 1.22561 0.93816 1.01402 0.97747 0.85905 1.23001 0.95011 1.04252 0.93727 1.21608 1.09367 0.96336 0.89737 0.83716 1.22527 0.74727 0.88261 0.78753 1.90683 1.42052 1.36498 1.71614 1.84550 1.64564 1.45804 1.37439 1.21698 0.92700 0.91543 0.97195 1.23083 1.04442 1.02462 0.91087 1.23330 0.99733 0.98587 1.03020 0.92614 0.88251 0.86423 0.73602 0.87802 0.87478 0.89760 0.89713 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.12 11.75 55.50 0.65 -23.46 16 2 C 0.07 2.03 4.39 -17.47 -0.08 1.95 16 3 Si 0.91 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.35 -9.41 7.91 -14.94 -0.12 -9.53 16 8 H 0.08 2.08 7.27 -52.48 -0.38 1.69 16 9 N -0.42 -10.50 2.83 -107.73 -0.31 -10.81 16 10 C 0.51 12.84 6.75 -10.99 -0.07 12.76 16 11 O -0.53 -15.37 14.03 5.54 0.08 -15.30 16 12 C -0.13 -2.65 4.47 -91.74 -0.41 -3.06 16 13 H 0.12 2.31 6.84 -51.93 -0.36 1.96 16 14 C -0.12 -2.06 9.94 -26.73 -0.27 -2.32 16 15 C -0.15 -2.67 5.82 -91.73 -0.53 -3.20 16 16 H 0.15 2.73 7.67 -51.93 -0.40 2.33 16 17 C 0.51 8.14 8.11 36.01 0.29 8.43 16 18 O -0.52 -9.30 17.02 -18.75 -0.32 -9.62 16 19 O -0.51 -6.34 13.42 -39.24 -0.53 -6.87 16 20 C 0.07 1.51 5.61 -67.93 -0.38 1.13 16 21 C -0.17 -3.13 9.80 -26.69 -0.26 -3.39 16 22 C -0.21 -3.63 10.36 -26.69 -0.28 -3.91 16 23 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 24 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 25 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 26 H 0.41 2.94 9.10 45.56 0.41 3.35 16 27 H 0.10 1.90 7.12 -51.93 -0.37 1.53 16 28 H 0.11 2.13 6.73 -51.93 -0.35 1.78 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -33.51 276.87 -6.07 -39.58 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -2.69 Total: 6.75 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.11 Total: -1.14 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.35 Total: -34.27 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.77 Total: -31.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.51 -6.07 -39.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.507 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds