Wall clock time and date at job start Thu Apr 9 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47225 * 300.00115 * 3 2 1 6 6 H 1.48504 * 109.47088 * 59.99949 * 3 2 1 7 7 C 1.38946 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00404 * 198.03513 * 7 2 1 9 9 N 1.37095 * 120.00099 * 18.03723 * 7 2 1 10 10 C 1.34777 * 120.00408 * 44.45659 * 9 7 2 11 11 O 1.21298 * 119.99349 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00541 * 180.02562 * 10 9 7 13 13 H 1.09002 * 115.54527 * 325.72748 * 12 10 9 14 14 C 1.53001 * 117.49496 * 111.38969 * 12 10 9 15 15 C 1.53007 * 60.02870 * 107.48248 * 14 12 10 16 16 H 1.08999 * 117.49473 * 252.51767 * 15 14 12 17 17 C 1.50702 * 117.49893 * 107.50056 * 15 14 12 18 18 O 1.20821 * 119.99915 * 291.39208 * 17 15 14 19 19 O 1.34225 * 119.99891 * 111.39061 * 17 15 14 20 20 C 1.46505 * 119.99798 * 224.45887 * 9 7 2 21 21 C 1.52998 * 117.50120 * 3.28435 * 20 9 7 22 22 C 1.52995 * 117.50043 * 294.61933 * 20 9 7 23 23 H 0.96998 * 120.00251 * 354.95606 * 1 2 3 24 24 H 1.09008 * 117.49695 * 214.97915 * 14 12 10 25 25 H 1.08998 * 117.50376 * 359.97438 * 14 12 10 26 26 H 0.96698 * 116.99978 * 180.02562 * 19 17 15 27 27 H 1.09007 * 115.54523 * 148.95140 * 20 9 7 28 28 H 1.09006 * 117.49606 * 359.97438 * 21 20 9 29 29 H 1.09000 * 117.49606 * 145.01672 * 21 20 9 30 30 H 1.09001 * 117.49919 * 214.97613 * 22 20 9 31 31 H 1.09000 * 117.50140 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0491 -1.2265 0.2890 9 7 1.3740 -2.3613 -0.3687 10 6 0.5773 -2.3768 -1.4557 11 8 0.4224 -1.3663 -2.1085 12 6 -0.1211 -3.6495 -1.8600 13 1 0.4320 -4.5696 -1.6710 14 6 -1.6433 -3.6973 -1.7131 15 6 -1.0122 -3.6022 -3.1037 16 1 -1.0930 -2.6505 -3.6290 17 6 -1.0582 -4.8314 -3.9743 18 8 -0.4065 -5.8052 -3.6796 19 8 -1.8232 -4.8444 -5.0771 20 6 1.5615 -3.5819 0.4196 21 6 2.4156 -3.4815 1.6849 22 6 2.9621 -4.1970 0.4469 23 1 -0.4850 0.8368 0.0739 24 1 -2.0918 -4.6490 -1.4280 25 1 -2.1396 -2.8084 -1.3236 26 1 -1.8206 -5.6555 -5.6037 27 1 0.7116 -4.2642 0.4388 28 1 2.8384 -2.5073 1.9308 29 1 2.1279 -4.0980 2.5365 30 1 3.0337 -5.2840 0.4847 31 1 3.7440 -3.6938 -0.1219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:19 Heat of formation + Delta-G solvation = -82.033455 kcal Electronic energy + Delta-G solvation = -17234.347257 eV Core-core repulsion = 14289.328483 eV Total energy + Delta-G solvation = -2945.018774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59420 -40.41021 -38.21710 -37.29452 -36.55890 -34.69129 -32.80731 -28.01331 -26.39357 -24.53192 -23.07464 -22.71755 -21.93710 -20.54940 -19.45657 -18.49089 -17.89065 -17.47461 -16.67944 -16.58779 -16.12271 -15.59152 -15.24451 -14.87676 -14.61504 -13.96000 -13.43524 -13.29819 -12.93886 -12.81291 -12.72502 -12.60968 -12.25171 -12.07093 -11.82878 -11.65568 -11.59540 -11.51360 -11.20824 -10.73640 -10.02214 -8.99097 -8.21049 -5.99341 0.98815 1.36122 1.43929 1.51492 1.86823 2.06358 2.34248 2.84062 3.08970 3.13179 3.38334 3.60627 3.85366 3.95200 4.14623 4.25727 4.31792 4.37021 4.49921 4.65128 4.90349 4.91257 5.00398 5.07249 5.28681 5.47117 5.50800 5.53206 6.20423 6.98414 7.02171 7.16413 7.67156 8.31963 8.87760 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.025245 B = 0.008264 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.858576 B = 3387.203699 C = 4141.360908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.358 4.358 8 H 0.078 0.922 9 N -0.436 5.436 10 C 0.495 3.505 11 O -0.585 6.585 12 C -0.146 4.146 13 H 0.137 0.863 14 C -0.098 4.098 15 C -0.149 4.149 16 H 0.127 0.873 17 C 0.529 3.471 18 O -0.539 6.539 19 O -0.502 6.502 20 C 0.044 3.956 21 C -0.167 4.167 22 C -0.185 4.185 23 H 0.261 0.739 24 H 0.138 0.862 25 H 0.101 0.899 26 H 0.432 0.568 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -10.610 -1.949 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.183 4.183 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.096 0.904 9 N -0.155 5.155 10 C 0.284 3.716 11 O -0.467 6.467 12 C -0.167 4.167 13 H 0.155 0.845 14 C -0.135 4.135 15 C -0.168 4.168 16 H 0.145 0.855 17 C 0.373 3.627 18 O -0.430 6.430 19 O -0.316 6.316 20 C -0.061 4.061 21 C -0.204 4.204 22 C -0.223 4.223 23 H 0.070 0.930 24 H 0.156 0.844 25 H 0.119 0.881 26 H 0.294 0.706 27 H 0.143 0.857 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.337 -9.881 -2.023 10.353 hybrid contribution 0.382 0.672 -0.423 0.881 sum -1.954 -9.209 -2.446 9.727 Atomic orbital electron populations 1.69917 1.07826 1.27623 1.44799 1.26039 0.95629 1.02483 0.94199 0.85260 0.79207 0.78851 0.77184 1.18402 1.22137 1.19630 1.19134 0.94729 0.85061 1.49642 0.90444 1.42854 1.43208 1.07975 1.21474 1.19577 0.82766 0.88183 0.81090 1.90484 1.64700 1.36539 1.54965 1.22270 0.95237 0.98956 1.00230 0.84523 1.23053 0.92455 1.05393 0.92641 1.21512 1.08344 0.96825 0.90151 0.85540 1.21927 0.74686 0.86963 0.79148 1.90685 1.43032 1.36888 1.72376 1.84477 1.63180 1.47584 1.36348 1.22018 0.95001 0.90560 0.98545 1.23138 1.03258 1.02111 0.91894 1.23340 0.96936 1.00452 1.01592 0.93021 0.84433 0.88087 0.70564 0.85672 0.89881 0.86308 0.85930 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.74 11.75 21.66 0.25 -51.48 16 2 C 0.02 1.31 4.39 84.93 0.37 1.68 16 3 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.36 -19.80 7.91 84.04 0.66 -19.13 16 8 H 0.08 4.16 7.27 -2.91 -0.02 4.14 16 9 N -0.44 -22.01 2.83 -613.12 -1.74 -23.74 16 10 C 0.49 25.43 6.75 87.66 0.59 26.02 16 11 O -0.58 -35.19 14.03 -3.08 -0.04 -35.23 16 12 C -0.15 -5.67 4.47 -11.52 -0.05 -5.72 16 13 H 0.14 4.90 6.84 -2.39 -0.02 4.89 16 14 C -0.10 -3.15 9.94 30.60 0.30 -2.85 16 15 C -0.15 -5.12 5.82 -11.51 -0.07 -5.19 16 16 H 0.13 4.86 7.67 -2.39 -0.02 4.84 16 17 C 0.53 15.53 8.11 71.24 0.58 16.11 16 18 O -0.54 -17.86 17.02 21.98 0.37 -17.49 16 19 O -0.50 -10.96 13.42 -51.37 -0.69 -11.65 16 20 C 0.04 1.70 5.61 44.99 0.25 1.96 16 21 C -0.17 -5.70 9.80 30.62 0.30 -5.40 16 22 C -0.18 -6.01 10.36 30.62 0.32 -5.70 16 23 H 0.26 14.92 8.32 -92.71 -0.77 14.15 16 24 H 0.14 3.37 8.14 -2.38 -0.02 3.35 16 25 H 0.10 3.62 8.14 -2.39 -0.02 3.61 16 26 H 0.43 4.70 9.10 -74.06 -0.67 4.03 16 27 H 0.13 4.29 7.12 -2.38 -0.02 4.27 16 28 H 0.08 3.26 6.73 -2.38 -0.02 3.25 16 29 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -74.56 276.87 3.94 -70.62 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.49 Total: 19.61 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 3.26 Total: 1.78 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -1.48 Total: -75.23 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -0.36 Total: -64.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.56 3.94 -70.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.418 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds