Wall clock time and date at job start Thu Apr 9 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99766 * 3 2 1 5 5 H 1.48495 * 109.47298 * 30.00358 * 3 2 1 6 6 H 1.48507 * 109.47138 * 149.99987 * 3 2 1 7 7 C 1.38948 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 169.81729 * 7 2 1 9 9 N 1.37104 * 119.99936 * 349.82417 * 7 2 1 10 10 C 1.46496 * 119.99601 * 337.39048 * 9 7 2 11 11 C 1.50701 * 109.47426 * 97.85594 * 10 9 7 12 12 O 1.20833 * 119.99607 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00197 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99927 * 157.66517 * 9 7 2 15 15 O 1.21296 * 119.99717 * 179.72454 * 14 9 7 16 16 C 1.50700 * 120.00287 * 359.72473 * 14 9 7 17 17 C 1.54626 * 111.03361 * 292.02363 * 16 14 9 18 18 C 1.51102 * 104.72321 * 217.33287 * 17 16 14 19 19 C 1.30524 * 111.10684 * 16.43854 * 18 17 16 20 20 C 1.51100 * 111.10196 * 359.97438 * 19 18 17 21 21 H 0.97000 * 119.99766 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47055 * 217.85662 * 10 9 7 23 23 H 1.08997 * 109.47813 * 337.85369 * 10 9 7 24 24 H 0.96703 * 116.99862 * 180.02562 * 13 11 10 25 25 H 1.09000 * 110.91082 * 56.03135 * 16 14 9 26 26 H 1.08994 * 110.39282 * 336.14611 * 17 16 14 27 27 H 1.09003 * 110.39236 * 98.52651 * 17 16 14 28 28 H 1.08006 * 124.44958 * 196.45724 * 18 17 16 29 29 H 1.07995 * 124.44971 * 180.02562 * 19 18 17 30 30 H 1.08999 * 110.39003 * 224.75112 * 20 19 18 31 31 H 1.09005 * 110.48386 * 102.42440 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0761 -1.2108 -0.1648 9 7 1.3395 -2.3812 0.2108 10 6 0.0503 -2.3769 0.9064 11 6 -1.0664 -2.4110 -0.1050 12 8 -0.8114 -2.4369 -1.2858 13 8 -2.3443 -2.4138 0.3059 14 6 1.8703 -3.5437 -0.2175 15 8 1.2805 -4.5863 -0.0270 16 6 3.1966 -3.5481 -0.9331 17 6 3.0826 -2.8684 -2.3173 18 6 3.9822 -3.6810 -3.2193 19 6 4.2688 -4.8351 -2.6812 20 6 3.6086 -4.9845 -1.3303 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0173 -3.2526 1.5519 23 1 -0.0339 -1.4733 1.5102 24 1 -3.0258 -2.4366 -0.3797 25 1 3.9678 -3.0740 -0.3260 26 1 2.0536 -2.9049 -2.6747 27 1 3.4306 -1.8368 -2.2637 28 1 4.3413 -3.3502 -4.1827 29 1 4.8961 -5.5845 -3.1408 30 1 4.3138 -5.3918 -0.6059 31 1 2.7292 -5.6243 -1.4042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:23 Heat of formation + Delta-G solvation = -119.929582 kcal Electronic energy + Delta-G solvation = -17822.793712 eV Core-core repulsion = 14876.131639 eV Total energy + Delta-G solvation = -2946.662073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40649 -40.37717 -38.40326 -36.96384 -36.44432 -33.46445 -31.10831 -29.21917 -28.76106 -26.68667 -23.56273 -22.04067 -20.83464 -19.59124 -18.89812 -18.70403 -18.06767 -17.36225 -16.78276 -16.39677 -16.17368 -16.09163 -15.24773 -14.82348 -13.77528 -13.71757 -13.50917 -13.30870 -13.13293 -12.94104 -12.66171 -12.60948 -12.29131 -12.18353 -12.07482 -11.97886 -11.88530 -11.51890 -10.97504 -10.45222 -9.86301 -9.72479 -8.34794 -5.98008 1.42627 1.43762 1.49569 1.61084 1.74597 1.86094 2.28765 2.53360 2.90912 3.16598 3.77087 3.87494 4.20970 4.35288 4.45637 4.51524 4.74720 4.77918 4.87536 4.94244 4.94941 5.11781 5.13596 5.36386 5.44849 5.63840 5.74944 5.90483 6.11957 6.35068 7.08299 7.36469 7.48597 7.87933 8.72340 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.011875 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.564317 B = 2357.329408 C = 3327.219950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 0.995 3.005 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.339 4.339 8 H 0.115 0.885 9 N -0.441 5.441 10 C 0.153 3.847 11 C 0.503 3.497 12 O -0.552 6.552 13 O -0.522 6.522 14 C 0.468 3.532 15 O -0.631 6.631 16 C -0.093 4.093 17 C -0.074 4.074 18 C -0.171 4.171 19 C -0.160 4.160 20 C -0.088 4.088 21 H 0.271 0.729 22 H 0.084 0.916 23 H 0.127 0.873 24 H 0.411 0.589 25 H 0.106 0.894 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -1.386 -0.923 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.133 0.867 9 N -0.158 5.158 10 C 0.027 3.973 11 C 0.346 3.654 12 O -0.442 6.442 13 O -0.334 6.334 14 C 0.259 3.741 15 O -0.519 6.519 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.188 4.188 19 C -0.177 4.177 20 C -0.125 4.125 21 H 0.081 0.919 22 H 0.102 0.898 23 H 0.145 0.855 24 H 0.270 0.730 25 H 0.124 0.876 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.103 0.897 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.267 -1.718 -0.808 5.599 hybrid contribution -0.815 1.002 -0.529 1.396 sum 4.452 -0.715 -1.337 4.703 Atomic orbital electron populations 1.69817 1.07445 1.28446 1.48956 1.26134 0.96156 1.02898 0.95504 0.84880 0.78474 0.76561 0.78174 1.20631 1.20868 1.17723 1.20014 0.93763 0.82699 1.50110 0.86721 1.43564 1.16477 1.06729 1.49078 1.20501 0.81025 1.03762 0.92016 1.23791 0.83186 0.68739 0.89660 1.90528 1.84688 1.47930 1.21016 1.84456 1.17192 1.86359 1.45434 1.20814 0.89451 0.83039 0.80844 1.90476 1.65877 1.33343 1.62222 1.21840 0.94171 0.98498 0.96898 1.21071 0.98171 0.99774 0.92154 1.23446 0.98600 0.96556 1.00233 1.23438 0.99997 0.98141 0.96156 1.21274 0.99881 0.95011 0.96378 0.91919 0.89830 0.85539 0.72966 0.87586 0.94344 0.90401 0.83332 0.82652 0.89705 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.55 9.00 21.66 0.19 -46.35 16 2 C -0.01 -0.31 5.10 84.93 0.43 0.13 16 3 Si 1.00 38.39 29.56 68.60 2.03 40.41 16 4 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.34 -16.51 8.23 84.04 0.69 -15.82 16 8 H 0.12 5.15 5.98 -2.91 -0.02 5.14 16 9 N -0.44 -22.26 2.20 -639.60 -1.41 -23.67 16 10 C 0.15 7.46 5.10 85.63 0.44 7.90 16 11 C 0.50 25.11 6.49 71.24 0.46 25.58 16 12 O -0.55 -31.45 16.77 21.94 0.37 -31.08 16 13 O -0.52 -21.07 13.42 -51.40 -0.69 -21.76 16 14 C 0.47 23.21 6.63 87.66 0.58 23.79 16 15 O -0.63 -34.32 15.22 -3.08 -0.05 -34.36 16 16 C -0.09 -3.75 2.54 -10.44 -0.03 -3.78 16 17 C -0.07 -2.89 5.44 30.53 0.17 -2.72 16 18 C -0.17 -5.16 10.77 26.26 0.28 -4.88 16 19 C -0.16 -4.54 10.78 26.26 0.28 -4.26 16 20 C -0.09 -3.07 6.18 30.53 0.19 -2.89 16 21 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 22 H 0.08 3.87 7.66 -2.39 -0.02 3.85 16 23 H 0.13 6.16 6.32 -2.39 -0.02 6.14 16 24 H 0.41 12.71 9.10 -74.06 -0.67 12.03 16 25 H 0.11 3.90 7.49 -2.39 -0.02 3.88 16 26 H 0.04 1.81 7.88 -2.39 -0.02 1.79 16 27 H 0.08 2.96 7.48 -2.39 -0.02 2.94 16 28 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 2.57 6.95 -2.38 -0.02 2.55 16 Total: -1.00 -66.71 266.20 4.43 -62.28 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.49 Total: 31.49 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 3.50 Total: 23.05 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.21 Total: -70.02 kcal Atomic # 8 Polarization: -86.84 SS G_CDS: -0.37 Total: -87.21 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.41 kcal Total: -66.71 4.43 -62.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.651 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds