Wall clock time and date at job start Thu Apr 9 2020 12:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30173 * 126.80140 * 2 1 4 4 O 1.20924 * 111.60339 * 180.25231 * 3 2 1 5 5 C 1.34033 * 111.56901 * 359.74323 * 4 3 2 6 6 C 1.50706 * 126.77935 * 180.02562 * 5 4 3 7 7 C 1.35458 * 106.44659 * 0.02562 * 5 4 3 8 8 C 1.50693 * 128.00587 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47606 * 359.97438 * 8 7 5 10 10 C 1.52995 * 109.47086 * 119.99970 * 8 7 5 11 11 C 1.50700 * 109.47050 * 239.99822 * 8 7 5 12 12 O 1.21218 * 120.00072 * 0.02562 * 11 8 7 13 13 O 1.34309 * 120.00154 * 180.02562 * 11 8 7 14 14 C 1.34924 * 117.00044 * 179.97438 * 13 11 8 15 15 H 1.07997 * 120.00257 * 359.97438 * 14 13 11 16 16 C 1.38748 * 119.99822 * 179.72786 * 14 13 11 17 17 N 1.31442 * 120.00231 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47412 * 59.99383 * 18 16 14 20 20 H 1.48499 * 109.47655 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46855 * 299.99367 * 18 16 14 22 22 H 1.09001 * 109.47297 * 270.16630 * 1 2 3 23 23 H 1.08996 * 109.47159 * 30.16805 * 1 2 3 24 24 H 1.09000 * 109.46805 * 150.16614 * 1 2 3 25 25 H 1.09000 * 109.46955 * 270.00690 * 6 5 4 26 26 H 1.08994 * 109.46805 * 29.99925 * 6 5 4 27 27 H 1.08993 * 109.46995 * 150.00092 * 6 5 4 28 28 H 1.09008 * 109.47141 * 179.97438 * 10 8 7 29 29 H 1.08999 * 109.47156 * 299.99769 * 10 8 7 30 30 H 1.08997 * 109.47508 * 59.99746 * 10 8 7 31 31 H 0.97009 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6025 -0.6067 -0.0034 6 6 4.9022 -1.3695 -0.0077 7 6 2.3539 -1.1321 0.0028 8 6 1.9591 -2.5863 0.0063 9 1 2.8557 -3.2063 0.0026 10 6 1.1350 -2.8880 1.2595 11 6 1.1365 -2.8865 -1.2201 12 8 0.8951 -2.0067 -2.0183 13 8 0.6707 -4.1288 -1.4289 14 6 -0.0593 -4.3297 -2.5457 15 1 -0.2456 -3.5101 -3.2238 16 6 -0.5662 -5.5906 -2.8256 17 7 -0.3350 -6.5894 -2.0030 18 14 -1.5763 -5.8690 -4.3721 19 1 -0.7560 -5.5391 -5.5652 20 1 -1.9971 -7.2915 -4.4392 21 1 -2.7785 -4.9976 -4.3416 22 1 -0.3634 0.0030 1.0277 23 1 -0.3633 0.8884 -0.5164 24 1 -0.3633 -0.8915 -0.5113 25 1 5.2112 -1.5550 -1.0364 26 1 5.6681 -0.7850 0.5019 27 1 4.7673 -2.3201 0.5082 28 1 0.8491 -3.9399 1.2619 29 1 1.7301 -2.6710 2.1466 30 1 0.2385 -2.2682 1.2628 31 1 -0.6892 -7.4710 -2.1990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750258450.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:43 Heat of formation + Delta-G solvation = -32.078224 kcal Electronic energy + Delta-G solvation = -17314.454529 eV Core-core repulsion = 14371.601976 eV Total energy + Delta-G solvation = -2942.852552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.60642 -39.18656 -36.07865 -34.60166 -33.49084 -32.23118 -31.51035 -28.38337 -27.42388 -25.63326 -24.28587 -22.09022 -20.00039 -19.48932 -17.72822 -17.40941 -16.72575 -16.20702 -15.01602 -14.69518 -14.42088 -13.90113 -13.81637 -13.24831 -12.94525 -12.82752 -12.65442 -12.40264 -12.23303 -11.90529 -11.74347 -11.39137 -11.24689 -11.13827 -10.58764 -10.48527 -10.25359 -9.82093 -9.47613 -9.05064 -8.78986 -8.59083 -6.43256 -4.11054 1.72715 2.53344 3.11053 3.17571 3.21212 3.36273 3.49931 3.93530 4.42200 4.64944 4.73241 5.05166 5.10816 5.18630 5.42303 5.48674 5.52459 5.58212 5.77900 5.81765 5.92371 5.97618 6.06579 6.22522 6.26026 6.46479 6.57658 6.83781 7.37532 7.93200 8.59715 8.69200 9.05923 9.83496 10.74534 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.036641 B = 0.006567 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.990631 B = 4262.603017 C = 4445.586701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.379 5.379 4 O 0.089 5.911 5 C -0.037 4.037 6 C -0.072 4.072 7 C -0.170 4.170 8 C 0.002 3.998 9 H 0.105 0.895 10 C -0.139 4.139 11 C 0.401 3.599 12 O -0.546 6.546 13 O -0.211 6.211 14 C -0.382 4.382 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.865 5.865 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.270 1.270 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 6.186 6.333 10.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 N -0.087 5.087 4 O 0.027 5.973 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.173 4.173 8 C -0.018 4.018 9 H 0.123 0.877 10 C -0.197 4.197 11 C 0.247 3.753 12 O -0.442 6.442 13 O -0.118 6.118 14 C -0.459 4.459 15 H 0.112 0.888 16 C -0.161 4.161 17 N -0.502 5.502 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.195 1.195 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.845 7.477 6.144 11.306 hybrid contribution -0.549 -0.944 -0.869 1.395 sum 5.296 6.534 5.276 9.928 Atomic orbital electron populations 1.20283 0.86240 1.04799 1.02301 1.23252 0.98831 0.87991 1.00170 1.73754 0.89239 1.23948 1.21782 1.84736 1.21798 1.22194 1.68597 1.24098 0.97904 0.84036 1.04035 1.20319 0.89962 0.98493 1.04141 1.20448 0.91720 0.96322 1.08842 1.18944 0.99272 0.89735 0.93832 0.87725 1.21759 0.99592 1.03623 0.94677 1.22880 0.82123 0.82819 0.87468 1.90571 1.59008 1.47481 1.47189 1.83866 1.57989 1.27733 1.42174 1.21160 1.29578 0.96563 0.98568 0.88806 1.25298 0.97443 0.94241 0.99069 1.69978 1.43103 1.01085 1.36059 0.85773 0.79672 0.77598 0.80316 1.19540 1.20353 1.19491 0.90875 0.91005 0.88774 0.89467 0.90055 0.89051 0.90132 0.92100 0.92117 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 8.93 36.01 0.32 -1.01 16 2 C 0.06 1.04 6.69 -82.10 -0.55 0.49 16 3 N -0.38 -6.97 12.07 33.42 0.40 -6.57 16 4 O 0.09 1.49 11.20 17.19 0.19 1.68 16 5 C -0.04 -0.57 7.49 -35.30 -0.26 -0.83 16 6 C -0.07 -0.74 10.17 36.01 0.37 -0.37 16 7 C -0.17 -2.99 4.47 -104.42 -0.47 -3.45 16 8 C 0.00 0.04 3.13 -92.93 -0.29 -0.25 16 9 H 0.10 1.66 7.13 -51.93 -0.37 1.29 16 10 C -0.14 -2.19 9.03 37.16 0.34 -1.86 16 11 C 0.40 9.60 6.48 36.01 0.23 9.83 16 12 O -0.55 -14.31 13.20 -19.06 -0.25 -14.56 16 13 O -0.21 -5.82 9.65 -20.71 -0.20 -6.02 16 14 C -0.38 -11.08 9.64 30.92 0.30 -10.78 16 15 H 0.09 2.75 6.86 -52.49 -0.36 2.39 16 16 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 17 N -0.87 -24.79 13.67 55.48 0.76 -24.03 16 18 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 22 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.09 1.81 5.79 -51.93 -0.30 1.51 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.82 7.39 -51.93 -0.38 0.44 16 28 H 0.08 1.34 8.11 -51.92 -0.42 0.92 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.96 6.75 -51.93 -0.35 0.61 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 273.21 15.07 4.12 4.12 Total: -1.00 -33.27 273.21 -3.55 -36.81 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.43 Total: -0.36 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.11 Total: -7.13 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 1.16 Total: -30.60 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.26 Total: -18.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.27 -3.55 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750258450.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.736 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds