Wall clock time and date at job start Thu Apr 9 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33647 * 126.27733 * 2 1 4 4 C 1.30638 * 109.01072 * 179.97438 * 3 2 1 5 5 O 1.33657 * 109.16983 * 359.97438 * 4 3 2 6 6 C 1.35366 * 107.67907 * 359.77119 * 5 4 3 7 7 C 1.46540 * 126.65497 * 180.24309 * 6 5 4 8 8 O 1.21612 * 120.00370 * 180.13713 * 7 6 5 9 9 O 1.34884 * 119.99554 * 0.14219 * 7 6 5 10 10 C 1.45205 * 117.00129 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47390 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47068 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47289 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99613 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99847 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47676 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47071 * 119.99671 * 17 15 13 20 20 H 1.48500 * 109.47110 * 239.99379 * 17 15 13 21 21 H 1.09001 * 109.46953 * 90.02696 * 1 2 3 22 22 H 1.09000 * 109.47318 * 210.02294 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.02925 * 1 2 3 24 24 H 1.08000 * 125.42034 * 179.97438 * 4 3 2 25 25 H 1.09007 * 109.46598 * 300.00249 * 10 9 7 26 26 H 1.09007 * 109.47010 * 59.99474 * 10 9 7 27 27 H 1.08995 * 109.47032 * 300.00139 * 11 10 9 28 28 H 1.09001 * 109.47016 * 60.00146 * 11 10 9 29 29 H 1.09003 * 109.47143 * 299.99683 * 12 11 10 30 30 H 1.08999 * 109.47353 * 59.99443 * 12 11 10 31 31 H 0.97001 * 119.99494 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2978 1.0774 0.0000 4 6 3.5454 0.6897 0.0006 5 8 3.5897 -0.6462 0.0015 6 6 2.3144 -1.0999 0.0067 7 6 1.8842 -2.5007 0.0144 8 8 0.6989 -2.7728 0.0160 9 8 2.8029 -3.4882 0.0199 10 6 2.3047 -4.8521 0.0281 11 6 3.4846 -5.8261 0.0328 12 6 2.9596 -7.2631 0.0407 13 6 4.1217 -8.2225 0.0460 14 1 5.1336 -7.8450 0.0435 15 6 3.8932 -9.5822 0.0529 16 7 2.6610 -10.0419 0.0555 17 14 5.3338 -10.7713 0.0587 18 1 6.6069 -10.0069 0.0540 19 1 5.2701 -11.6201 1.2756 20 1 5.2696 -11.6326 -1.1493 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.4043 1.3443 0.0003 25 1 1.6976 -5.0118 0.9192 26 1 1.6970 -5.0222 -0.8608 27 1 4.0913 -5.6662 -0.8585 28 1 4.0925 -5.6561 0.9214 29 1 2.3527 -7.4233 0.9319 30 1 2.3518 -7.4329 -0.8481 31 1 2.5003 -10.9985 0.0607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750925010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:44 Heat of formation + Delta-G solvation = -78.118987 kcal Electronic energy + Delta-G solvation = -16099.397509 eV Core-core repulsion = 13154.548479 eV Total energy + Delta-G solvation = -2944.849030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.74735 -40.15927 -36.77818 -35.52193 -34.03189 -32.08205 -31.65312 -28.55312 -27.02612 -24.56357 -23.22318 -22.10038 -20.94093 -20.37137 -18.30701 -17.30741 -17.15666 -16.59230 -16.12446 -16.04173 -14.88174 -14.48214 -14.07664 -13.58036 -13.54147 -13.25594 -12.52403 -12.25385 -12.25239 -11.94391 -11.42507 -11.25844 -11.01807 -10.78024 -10.70087 -10.52357 -10.50228 -9.78930 -9.56479 -9.29937 -9.18105 -8.41361 -6.05977 -4.08986 0.42938 2.03601 2.05877 2.66643 2.89870 3.28825 3.36381 3.40746 3.69641 4.35134 4.41391 4.64471 5.13143 5.17418 5.30252 5.39251 5.49034 5.49702 5.55508 5.63301 5.92432 5.97371 6.28497 6.48521 6.71194 6.92733 7.16764 7.57046 7.65040 7.67426 7.92268 8.33050 8.97368 9.55559 11.05514 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.056871 B = 0.003838 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.227741 B = 7293.300970 C = 7754.476639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 N -0.496 5.496 4 C 0.210 3.790 5 O -0.175 6.175 6 C -0.095 4.095 7 C 0.553 3.447 8 O -0.483 6.483 9 O -0.345 6.345 10 C 0.068 3.932 11 C -0.110 4.110 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.260 0.740 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 20.453 -0.094 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 N -0.226 5.226 4 C -0.015 4.015 5 O -0.060 6.060 6 C -0.148 4.148 7 C 0.396 3.604 8 O -0.373 6.373 9 O -0.261 6.261 10 C -0.004 4.004 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.104 0.896 22 H 0.115 0.885 23 H 0.099 0.901 24 H 0.275 0.725 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.159 20.729 -0.093 20.762 hybrid contribution 1.069 -1.346 -0.017 1.719 sum -0.090 19.383 -0.109 19.383 Atomic orbital electron populations 1.20466 0.84958 1.04703 1.04081 1.22131 0.98495 0.86026 0.96786 1.70401 1.01344 1.31094 1.19745 1.28452 0.97648 0.79547 0.95822 1.84609 1.29159 1.24020 1.68201 1.21779 0.81916 0.93594 1.17552 1.18898 0.84256 0.83398 0.73849 1.90921 1.17073 1.82909 1.46349 1.86667 1.38957 1.17760 1.82731 1.23671 0.99410 0.74764 1.02598 1.21794 0.95446 0.95314 1.02175 1.19064 0.96967 0.87520 0.97780 1.21204 0.92879 0.90937 1.50967 0.92351 1.25029 0.95763 0.98517 0.95160 1.69974 1.19141 1.13638 1.50573 0.86484 0.82632 0.80972 0.77621 1.19664 1.20950 1.20956 0.89587 0.88501 0.90063 0.72460 0.90994 0.90997 0.92008 0.92003 0.96130 0.96126 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.88 36.01 0.36 -0.50 16 2 C 0.09 1.09 7.16 -82.45 -0.59 0.50 16 3 N -0.50 -5.51 11.25 -10.87 -0.12 -5.63 16 4 C 0.21 1.79 13.21 52.25 0.69 2.48 16 5 O -0.18 -2.11 10.79 4.36 0.05 -2.06 16 6 C -0.09 -1.30 7.25 -36.89 -0.27 -1.57 16 7 C 0.55 8.78 7.93 34.08 0.27 9.05 16 8 O -0.48 -8.12 14.58 -19.35 -0.28 -8.41 16 9 O -0.35 -5.96 10.23 -41.99 -0.43 -6.39 16 10 C 0.07 1.23 5.48 37.16 0.20 1.44 16 11 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.10 1.06 6.45 -51.93 -0.34 0.72 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.26 0.65 8.06 -52.49 -0.42 0.23 16 25 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 282.68 15.07 4.26 4.26 Total: -1.00 -32.41 282.68 -4.53 -36.93 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -3.68 Total: -5.29 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.04 Total: -3.96 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.61 Total: -31.52 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.66 Total: -16.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.41 -4.53 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750925010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.184 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds