Wall clock time and date at job start Thu Apr 9 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33647 * 126.27733 * 2 1 4 4 C 1.30638 * 109.01072 * 179.97438 * 3 2 1 5 5 O 1.33657 * 109.16983 * 359.97438 * 4 3 2 6 6 C 1.35366 * 107.67907 * 359.77119 * 5 4 3 7 7 C 1.46540 * 126.65497 * 180.24309 * 6 5 4 8 8 O 1.21612 * 120.00370 * 180.13713 * 7 6 5 9 9 O 1.34884 * 119.99554 * 0.14219 * 7 6 5 10 10 C 1.45205 * 117.00129 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47390 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47068 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47289 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99613 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99847 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47676 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47071 * 119.99671 * 17 15 13 20 20 H 1.48500 * 109.47110 * 239.99379 * 17 15 13 21 21 H 1.09001 * 109.46953 * 90.02696 * 1 2 3 22 22 H 1.09000 * 109.47318 * 210.02294 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.02925 * 1 2 3 24 24 H 1.08000 * 125.42034 * 179.97438 * 4 3 2 25 25 H 1.09007 * 109.46598 * 300.00249 * 10 9 7 26 26 H 1.09007 * 109.47010 * 59.99474 * 10 9 7 27 27 H 1.08995 * 109.47032 * 300.00139 * 11 10 9 28 28 H 1.09001 * 109.47016 * 60.00146 * 11 10 9 29 29 H 1.09003 * 109.47143 * 299.99683 * 12 11 10 30 30 H 1.08999 * 109.47353 * 59.99443 * 12 11 10 31 31 H 0.97001 * 119.99494 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2978 1.0774 0.0000 4 6 3.5454 0.6897 0.0006 5 8 3.5897 -0.6462 0.0015 6 6 2.3144 -1.0999 0.0067 7 6 1.8842 -2.5007 0.0144 8 8 0.6989 -2.7728 0.0160 9 8 2.8029 -3.4882 0.0199 10 6 2.3047 -4.8521 0.0281 11 6 3.4846 -5.8261 0.0328 12 6 2.9596 -7.2631 0.0407 13 6 4.1217 -8.2225 0.0460 14 1 5.1336 -7.8450 0.0435 15 6 3.8932 -9.5822 0.0529 16 7 2.6610 -10.0419 0.0555 17 14 5.3338 -10.7713 0.0587 18 1 6.6069 -10.0069 0.0540 19 1 5.2701 -11.6201 1.2756 20 1 5.2696 -11.6326 -1.1493 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.4043 1.3443 0.0003 25 1 1.6976 -5.0118 0.9192 26 1 1.6970 -5.0222 -0.8608 27 1 4.0913 -5.6662 -0.8585 28 1 4.0925 -5.6561 0.9214 29 1 2.3527 -7.4233 0.9319 30 1 2.3518 -7.4329 -0.8481 31 1 2.5003 -10.9985 0.0607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750925010.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:44 Heat of formation + Delta-G solvation = -100.609648 kcal Electronic energy + Delta-G solvation = -16100.372777 eV Core-core repulsion = 13154.548479 eV Total energy + Delta-G solvation = -2945.824298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.60439 -41.43618 -38.08889 -36.44987 -35.93261 -33.74376 -32.82866 -29.70554 -28.65684 -25.84281 -24.68876 -23.14623 -22.23281 -21.89832 -19.44428 -18.68914 -18.31878 -18.02854 -17.37351 -17.31131 -16.49815 -15.68184 -15.62293 -14.99552 -14.35832 -14.26067 -14.08980 -13.89998 -13.81513 -13.33812 -12.86999 -12.52962 -12.44641 -12.26854 -12.21355 -12.15048 -11.83082 -11.49792 -11.47692 -11.24041 -10.58134 -10.21942 -8.22390 -6.33654 -0.52612 1.02689 1.19810 1.41692 1.41949 1.55496 1.58978 1.84625 2.41350 3.02545 3.11779 3.47241 3.56452 3.96862 3.98620 4.26173 4.32360 4.38251 4.62487 4.72659 4.76900 4.78612 4.93587 5.03574 5.16529 5.27151 5.47894 5.62704 5.79562 6.17805 6.27477 6.46744 6.82084 7.35907 8.89975 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.056871 B = 0.003838 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.227741 B = 7293.300970 C = 7754.476639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.103 3.897 3 N -0.521 5.521 4 C 0.245 3.755 5 O -0.189 6.189 6 C -0.134 4.134 7 C 0.553 3.447 8 O -0.501 6.501 9 O -0.352 6.352 10 C 0.078 3.922 11 C -0.095 4.095 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.316 0.684 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 22.045 -0.136 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.021 4.021 3 N -0.251 5.251 4 C 0.022 3.978 5 O -0.076 6.076 6 C -0.187 4.187 7 C 0.398 3.602 8 O -0.392 6.392 9 O -0.268 6.268 10 C 0.005 3.995 11 C -0.133 4.133 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.115 0.885 22 H 0.103 0.897 23 H 0.118 0.882 24 H 0.331 0.669 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.386 22.348 -0.134 22.351 hybrid contribution 0.597 -1.664 -0.005 1.768 sum 0.982 20.683 -0.139 20.707 Atomic orbital electron populations 1.20544 0.83976 1.05000 1.04803 1.22476 0.99339 0.85920 0.94362 1.70487 1.02345 1.30608 1.21621 1.29839 0.98481 0.78645 0.90818 1.84606 1.28391 1.25627 1.68931 1.21409 0.83074 0.92554 1.21652 1.19183 0.83908 0.83956 0.73176 1.90901 1.17554 1.83360 1.47400 1.86628 1.39484 1.17377 1.83303 1.23323 0.98088 0.75396 1.02712 1.21481 0.96121 0.93133 1.02553 1.18940 0.96015 0.90429 0.95746 1.21647 0.93743 0.91899 1.50870 0.91802 1.25989 0.98678 1.00571 0.94581 1.70099 1.21455 1.14248 1.51448 0.85344 0.79219 0.78375 0.77781 1.18479 1.20359 1.20370 0.88524 0.89687 0.88198 0.66925 0.90954 0.90965 0.91564 0.91556 0.98174 0.98170 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.88 71.24 0.70 -0.94 16 2 C 0.10 2.37 7.16 41.86 0.30 2.67 16 3 N -0.52 -10.22 11.25 -303.06 -3.41 -13.63 16 4 C 0.25 3.34 13.21 130.42 1.72 5.06 16 5 O -0.19 -4.19 10.79 -7.25 -0.08 -4.27 16 6 C -0.13 -3.58 7.25 24.02 0.17 -3.40 16 7 C 0.55 17.66 7.93 69.99 0.56 18.22 16 8 O -0.50 -17.16 14.58 19.47 0.28 -16.87 16 9 O -0.35 -12.17 10.23 -57.03 -0.58 -12.75 16 10 C 0.08 2.86 5.48 71.98 0.39 3.26 16 11 C -0.10 -3.96 5.53 30.59 0.17 -3.79 16 12 C 0.03 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 17 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 22 H 0.08 1.84 6.45 -2.39 -0.02 1.83 16 23 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.32 -0.11 8.06 -2.91 -0.02 -0.13 16 25 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 26 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 27 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.46 282.68 4.52 -65.94 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.13 Total: -0.79 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 4.86 Total: -7.44 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -3.13 Total: -69.71 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.38 Total: -33.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.46 4.52 -65.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750925010.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.668 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds