Wall clock time and date at job start Thu Apr 9 2020 12:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35452 * 126.77557 * 2 1 4 4 C 1.41382 * 103.98221 * 180.09398 * 3 2 1 5 5 C 1.50703 * 126.80134 * 179.88426 * 4 3 2 6 6 O 1.45198 * 109.47256 * 359.71299 * 5 4 3 7 7 C 1.34230 * 117.00173 * 179.97438 * 6 5 4 8 8 O 1.20818 * 119.99983 * 0.27497 * 7 6 5 9 9 C 1.50706 * 119.99763 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46755 * 89.99832 * 15 13 11 17 17 H 1.48495 * 109.46931 * 209.99846 * 15 13 11 18 18 H 1.48500 * 109.46738 * 330.00088 * 15 13 11 19 19 N 1.30174 * 106.39932 * 359.62615 * 4 3 2 20 20 O 1.20927 * 111.60091 * 0.23644 * 19 4 3 21 21 H 1.08990 * 109.47188 * 180.30685 * 1 2 3 22 22 H 1.09010 * 109.46739 * 300.30683 * 1 2 3 23 23 H 1.09000 * 109.47256 * 60.30059 * 1 2 3 24 24 H 1.07997 * 128.00994 * 359.95605 * 3 2 1 25 25 H 1.09003 * 109.47158 * 239.71690 * 5 4 3 26 26 H 1.08998 * 109.46923 * 119.71325 * 5 4 3 27 27 H 1.09000 * 109.47161 * 299.99883 * 9 7 6 28 28 H 1.09001 * 109.46740 * 60.00026 * 9 7 6 29 29 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 30 30 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 31 31 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.3000 -0.0056 6 8 4.6457 2.7256 -0.0132 7 6 5.7044 3.5507 -0.0165 8 8 6.8241 3.0969 -0.0182 9 6 5.4963 5.0433 -0.0249 10 6 6.8546 5.7475 -0.0265 11 6 6.6466 7.2401 -0.0356 12 1 5.6457 7.6458 -0.0393 13 6 7.7340 8.0878 -0.0390 14 7 8.9528 7.5937 -0.0340 15 14 7.4762 9.9379 -0.0510 16 1 7.4055 10.4367 1.3460 17 1 8.6099 10.5911 -0.7532 18 1 6.2081 10.2563 -0.7551 19 7 3.4764 -0.7564 0.0048 20 8 2.3095 -1.0736 0.0063 21 1 -0.3633 -1.0276 0.0055 22 1 -0.3633 0.5186 0.8873 23 1 -0.3634 0.5092 -0.8927 24 1 2.0345 2.1271 -0.0007 25 1 5.4949 1.0361 -0.8941 26 1 5.4941 1.0453 0.8859 27 1 4.9382 5.3274 -0.9171 28 1 4.9362 5.3370 0.8629 29 1 7.4123 5.4634 0.8659 30 1 7.4151 5.4539 -0.9141 31 1 9.7179 8.1900 -0.0361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618234.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:01 Heat of formation + Delta-G solvation = -39.542909 kcal Electronic energy + Delta-G solvation = -15998.587053 eV Core-core repulsion = 13055.410808 eV Total energy + Delta-G solvation = -2943.176245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.12358 -40.06377 -36.52049 -34.39291 -33.63807 -33.55747 -31.21416 -28.26878 -27.98521 -25.82814 -23.35427 -22.07184 -20.53170 -19.75243 -17.90620 -17.58672 -17.25145 -16.31183 -16.24744 -15.55766 -14.56738 -14.48940 -14.03212 -13.91995 -13.56519 -13.30326 -12.67264 -12.50275 -12.29428 -12.23335 -11.38737 -11.24134 -11.00531 -10.92044 -10.67129 -10.11563 -10.02144 -10.00562 -9.62706 -9.50221 -9.21567 -8.40555 -6.04194 -4.09479 1.25667 2.02331 2.68814 2.72364 2.93394 3.29931 3.36294 3.38938 4.07566 4.31482 4.43096 4.81918 4.98785 5.06929 5.07930 5.17946 5.21750 5.31311 5.37810 5.51721 5.68168 5.87799 6.05890 6.13007 6.54023 6.83261 7.62881 7.69052 7.94558 8.05435 8.17252 8.33718 8.97511 9.54829 11.06791 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.054117 B = 0.003799 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.276045 B = 7368.453932 C = 7854.675701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.040 4.040 3 C -0.209 4.209 4 C 0.019 3.981 5 C 0.146 3.854 6 O -0.361 6.361 7 C 0.460 3.540 8 O -0.501 6.501 9 C -0.101 4.101 10 C 0.032 3.968 11 C -0.530 4.530 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 N -0.359 5.359 20 O 0.102 5.898 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.178 0.822 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 -13.189 0.067 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.230 4.230 4 C -0.139 4.139 5 C 0.071 3.929 6 O -0.279 6.279 7 C 0.303 3.697 8 O -0.387 6.387 9 C -0.138 4.138 10 C -0.005 4.005 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 N -0.064 5.064 20 O 0.034 5.966 21 H 0.100 0.900 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.196 0.804 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.733 -14.324 0.066 21.277 hybrid contribution -0.204 1.643 0.003 1.655 sum -15.936 -12.682 0.069 20.367 Atomic orbital electron populations 1.20335 0.83802 1.04568 1.04279 1.24553 0.96470 0.86007 1.03272 1.22421 0.90573 1.01505 1.08508 1.23149 0.97045 0.90210 1.03465 1.20604 0.90178 0.78040 1.04113 1.86494 1.39615 1.16614 1.85166 1.24868 0.82162 0.91049 0.71614 1.90658 1.25243 1.78032 1.44760 1.21793 1.04982 0.82888 1.04150 1.19041 0.88462 0.94025 0.98995 1.21140 0.92871 0.90790 1.51968 0.92266 1.25025 0.95149 0.99084 0.95075 1.69990 0.97834 1.35101 1.49803 0.86530 0.77808 0.85130 0.78142 1.20586 1.21178 1.19771 1.73797 0.97236 1.15230 1.20180 1.84821 1.11028 1.33174 1.67578 0.89958 0.89065 0.89066 0.80430 0.89055 0.89060 0.88758 0.88787 0.95523 0.95503 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 3 C -0.21 -2.35 10.46 -39.38 -0.41 -2.76 16 4 C 0.02 0.26 7.28 -82.10 -0.60 -0.33 16 5 C 0.15 2.13 6.09 36.01 0.22 2.35 16 6 O -0.36 -5.81 9.72 -39.26 -0.38 -6.19 16 7 C 0.46 8.83 7.96 36.01 0.29 9.12 16 8 O -0.50 -11.25 15.73 -18.74 -0.29 -11.55 16 9 C -0.10 -1.99 5.75 -27.88 -0.16 -2.15 16 10 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 11 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 15 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.36 -5.01 12.07 33.42 0.40 -4.61 16 20 O 0.10 1.21 11.20 17.18 0.19 1.40 16 21 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.09 0.33 8.14 -51.92 -0.42 -0.10 16 23 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.18 1.75 8.05 -52.49 -0.42 1.33 16 25 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -32.75 284.43 -4.92 -37.68 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -3.76 Total: -4.11 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.08 Total: -7.02 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 1.14 Total: -30.69 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.48 Total: -16.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.75 -4.92 -37.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618234.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.866 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds