Wall clock time and date at job start Thu Apr 9 2020 12:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99555 * 2 1 4 4 H 1.48502 * 109.47636 * 270.00046 * 3 2 1 5 5 H 1.48497 * 109.47453 * 30.00421 * 3 2 1 6 6 H 1.48504 * 109.47053 * 150.00414 * 3 2 1 7 7 C 1.37875 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00621 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99208 * 180.02562 * 7 2 1 10 10 O 1.42904 * 109.46561 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99959 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47229 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47143 * 65.00445 * 12 11 10 14 14 C 1.34889 * 117.00076 * 180.02562 * 13 12 11 15 15 O 1.21624 * 119.99915 * 359.71464 * 14 13 12 16 16 C 1.46496 * 120.00125 * 179.97438 * 14 13 12 17 17 C 1.37990 * 126.26242 * 179.41437 * 16 14 13 18 18 C 1.39805 * 106.96681 * 179.84786 * 17 16 14 19 19 C 1.35486 * 107.84065 * 0.41379 * 18 17 16 20 20 N 1.34958 * 108.98705 * 359.73875 * 19 18 17 21 21 H 0.96995 * 125.63726 * 180.02562 * 20 19 18 22 22 H 0.96999 * 120.00653 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47570 * 59.99891 * 9 7 2 24 24 H 1.08997 * 109.47087 * 299.99364 * 9 7 2 25 25 H 1.08998 * 109.47191 * 59.99889 * 11 10 9 26 26 H 1.09000 * 109.47041 * 300.00290 * 11 10 9 27 27 H 1.08996 * 109.47016 * 305.00130 * 12 11 10 28 28 H 1.09001 * 109.46982 * 185.00134 * 12 11 10 29 29 H 1.07998 * 126.51665 * 359.95497 * 17 16 14 30 30 H 1.07993 * 126.08009 * 180.12259 * 18 17 16 31 31 H 1.08000 * 125.50990 * 179.74242 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9879 -2.5412 -0.0001 11 6 5.4125 -2.6540 -0.0001 12 6 5.8070 -4.1322 0.0004 13 8 5.3729 -4.7495 -1.2401 14 6 5.6451 -6.0610 -1.3996 15 8 6.2342 -6.6702 -0.5272 16 6 5.2362 -6.7501 -2.6260 17 6 5.4569 -8.0783 -2.9282 18 6 4.8993 -8.3078 -4.1895 19 6 4.3693 -7.1404 -4.6277 20 7 4.5664 -6.1895 -3.6905 21 1 4.2829 -5.2642 -3.7559 22 1 -0.4851 0.8400 0.0004 23 1 3.8746 -0.6806 0.8904 24 1 3.8752 -0.6795 -0.8895 25 1 5.8153 -2.1705 0.8899 26 1 5.8152 -2.1703 -0.8901 27 1 5.3313 -4.6349 0.8424 28 1 6.8899 -4.2192 0.0899 29 1 5.9626 -8.8032 -2.3076 30 1 4.8962 -9.2472 -4.7222 31 1 3.8697 -6.9944 -5.5740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815183467.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:09 Heat of formation + Delta-G solvation = -112.480552 kcal Electronic energy + Delta-G solvation = -16172.024714 eV Core-core repulsion = 13225.685655 eV Total energy + Delta-G solvation = -2946.339059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.32711 -40.95199 -38.82623 -37.44242 -34.91729 -32.24592 -31.90137 -30.50149 -29.47762 -25.07460 -24.03497 -23.26277 -21.73627 -21.14161 -19.99647 -19.12918 -18.23000 -17.96564 -17.08123 -16.63651 -16.49722 -16.15131 -15.21781 -14.97989 -14.72683 -14.60254 -14.25597 -13.92010 -13.68545 -13.37553 -13.25809 -13.03096 -12.67280 -12.37729 -11.89757 -11.82617 -11.77890 -11.38706 -10.95550 -10.44807 -10.04347 -9.34126 -8.39162 -6.48202 0.16951 1.33370 1.36724 1.47538 1.53564 1.73117 2.09889 2.24518 2.28373 2.91045 2.93784 3.73060 3.88693 4.07823 4.27806 4.32649 4.35480 4.40159 4.47104 4.56266 4.66552 4.96875 5.04911 5.17141 5.29784 5.40022 5.69263 5.88069 5.88712 6.46583 6.55537 6.61441 6.68227 7.16353 8.78143 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.004724 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.741345 B = 5925.795519 C = 6498.125882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.550 4.550 8 H 0.026 0.974 9 C 0.178 3.822 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.075 3.925 13 O -0.361 6.361 14 C 0.532 3.468 15 O -0.536 6.536 16 C -0.087 4.087 17 C -0.102 4.102 18 C -0.226 4.226 19 C 0.054 3.946 20 N -0.525 5.525 21 H 0.431 0.569 22 H 0.274 0.726 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.932 -10.020 -9.375 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.588 4.588 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.025 4.025 12 C 0.002 3.998 13 O -0.278 6.278 14 C 0.380 3.620 15 O -0.427 6.427 16 C -0.197 4.197 17 C -0.129 4.129 18 C -0.249 4.249 19 C -0.085 4.085 20 N -0.120 5.120 21 H 0.270 0.730 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.169 0.831 30 H 0.192 0.808 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 13.798 -10.023 -9.039 19.301 hybrid contribution -0.180 1.143 0.409 1.227 sum 13.618 -8.880 -8.630 18.406 Atomic orbital electron populations 1.70037 1.08397 1.28894 1.50898 1.25874 0.95800 1.03524 0.93276 0.85571 0.79496 0.77152 0.79884 1.18241 1.19981 1.16521 1.21168 0.91093 0.93776 1.52740 0.95546 1.20373 0.93227 0.80548 0.95563 1.87926 1.20707 1.28805 1.95403 1.22761 0.82797 0.94154 1.02806 1.23283 1.00946 0.91998 0.83580 1.86632 1.74491 1.24271 1.42358 1.20220 0.75635 0.80245 0.85886 1.90838 1.41124 1.67520 1.43234 1.19390 1.14575 0.94954 0.90774 1.21644 1.00973 0.92298 0.97992 1.21296 1.06879 1.00100 0.96622 1.22845 1.01895 0.87819 0.95893 1.42121 1.42802 1.13160 1.13870 0.72986 0.91737 0.96386 0.96577 0.88881 0.91379 0.91351 0.86968 0.83075 0.80821 0.76740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 42.28 27.47 68.60 1.88 44.16 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.02 16 7 C -0.55 -33.36 9.99 25.60 0.26 -33.11 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.18 8.74 4.76 71.24 0.34 9.08 16 10 O -0.41 -18.83 10.30 -145.58 -1.50 -20.33 16 11 C 0.05 1.65 6.33 71.98 0.46 2.10 16 12 C 0.08 2.27 5.86 71.98 0.42 2.69 16 13 O -0.36 -12.05 10.20 -55.37 -0.57 -12.62 16 14 C 0.53 17.40 7.93 69.97 0.55 17.96 16 15 O -0.54 -19.36 16.68 19.43 0.32 -19.03 16 16 C -0.09 -2.38 7.10 40.32 0.29 -2.09 16 17 C -0.10 -2.40 10.66 22.59 0.24 -2.16 16 18 C -0.23 -3.85 10.81 22.01 0.24 -3.61 16 19 C 0.05 0.84 11.87 83.58 0.99 1.83 16 20 N -0.52 -11.27 6.07 -184.05 -1.12 -12.39 16 21 H 0.43 8.53 8.96 -92.71 -0.83 7.70 16 22 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 24 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.22 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.19 283.04 3.83 -73.36 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.26 Total: 11.66 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.25 Total: -6.08 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.82 Total: -71.12 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -1.74 Total: -51.98 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Total: -77.19 3.83 -73.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815183467.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.124 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds