Wall clock time and date at job start Thu Apr 9 2020 12:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86798 * 120.00279 * 2 1 4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47102 * 300.00280 * 3 2 1 6 6 H 1.48506 * 109.47106 * 59.99952 * 3 2 1 7 7 C 1.39077 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 158.92360 * 7 2 1 9 9 N 1.36820 * 119.99661 * 338.64993 * 7 2 1 10 10 C 1.46493 * 120.00424 * 343.46839 * 9 7 2 11 11 C 1.50701 * 109.47467 * 96.11378 * 10 9 7 12 12 O 1.20828 * 119.99750 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00073 * 180.02562 * 11 10 9 14 14 C 1.34783 * 119.99849 * 163.46868 * 9 7 2 15 15 O 1.21664 * 119.99777 * 359.97438 * 14 9 7 16 16 C 1.46950 * 119.99898 * 179.97438 * 14 9 7 17 17 C 1.33125 * 119.99809 * 179.97438 * 16 14 9 18 18 C 1.50694 * 119.99854 * 179.97438 * 17 16 14 19 19 C 1.53004 * 117.49726 * 188.74568 * 18 17 16 20 20 C 1.53002 * 117.49735 * 120.08896 * 18 17 16 21 21 H 0.96993 * 120.00270 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47360 * 216.12087 * 10 9 7 23 23 H 1.09003 * 109.46756 * 336.11078 * 10 9 7 24 24 H 0.96694 * 116.99817 * 180.02562 * 13 11 10 25 25 H 1.07995 * 119.99836 * 359.97438 * 16 14 9 26 26 H 1.08002 * 120.00005 * 0.02562 * 17 16 14 27 27 H 1.09003 * 115.55393 * 334.42399 * 18 17 16 28 28 H 1.08995 * 117.50383 * 0.02562 * 19 18 17 29 29 H 1.09001 * 117.49362 * 145.02360 * 19 18 17 30 30 H 1.08999 * 117.49946 * 214.97708 * 20 18 17 31 31 H 1.08998 * 117.49991 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 -0.0006 5 1 1.8888 2.3964 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0088 -1.2044 -0.0005 8 1 3.0346 -1.2356 -0.3369 9 7 1.3951 -2.3488 0.4303 10 6 0.1632 -2.2671 1.2189 11 6 -1.0273 -2.4282 0.3092 12 8 -0.8635 -2.5947 -0.8763 13 8 -2.2697 -2.3867 0.8158 14 6 1.9239 -3.5515 0.1293 15 8 2.9467 -3.6194 -0.5260 16 6 1.2651 -4.7806 0.5925 17 6 1.7871 -5.9685 0.2947 18 6 1.1118 -7.2289 0.7702 19 6 1.8613 -8.5485 0.5757 20 6 0.6438 -8.2241 -0.2935 21 1 -0.4850 0.8400 0.0004 22 1 0.1580 -3.0590 1.9679 23 1 0.1130 -1.2977 1.7149 24 1 -3.0015 -2.4952 0.1932 25 1 0.3574 -4.7202 1.1746 26 1 2.6951 -6.0288 -0.2870 27 1 0.4997 -7.1250 1.6662 28 1 2.8430 -8.5049 0.1042 29 1 1.7421 -9.3129 1.3436 30 1 -0.2758 -8.7752 -0.0972 31 1 0.8240 -7.9669 -1.3373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:24 Heat of formation + Delta-G solvation = -94.453434 kcal Electronic energy + Delta-G solvation = -17105.709487 eV Core-core repulsion = 14160.152143 eV Total energy + Delta-G solvation = -2945.557344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -41.25072 -40.00668 -38.39254 -37.04686 -36.38871 -33.95554 -33.05492 -29.56549 -27.38828 -24.74185 -23.20728 -22.83941 -21.49705 -19.97240 -19.06467 -18.72585 -18.24170 -17.38698 -16.75154 -16.46702 -16.21182 -15.78499 -15.20247 -15.19025 -14.52484 -13.78029 -13.58615 -13.56522 -13.30170 -12.68267 -12.52232 -12.40729 -12.31445 -12.16891 -12.12445 -12.01644 -11.56599 -11.30812 -11.00085 -10.52980 -10.02127 -9.86829 -8.49933 -5.98178 0.46851 1.39428 1.41473 1.56470 1.71917 2.12428 2.32186 2.56567 2.91099 3.07742 3.19135 3.67372 3.98818 4.02024 4.14929 4.25168 4.28381 4.48985 4.72085 4.80537 4.89591 5.02327 5.16673 5.28439 5.39826 5.46123 5.51408 5.93759 6.02272 6.37698 7.05737 7.25534 7.43454 7.90608 8.57066 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.007367 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.799153 B = 3800.073127 C = 4502.119913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.000 4.000 3 Si 0.997 3.003 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.344 4.344 8 H 0.078 0.922 9 N -0.434 5.434 10 C 0.140 3.860 11 C 0.498 3.502 12 O -0.550 6.550 13 O -0.516 6.516 14 C 0.467 3.533 15 O -0.637 6.637 16 C -0.205 4.205 17 C -0.050 4.050 18 C -0.147 4.147 19 C -0.159 4.159 20 C -0.167 4.167 21 H 0.278 0.722 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.414 0.586 25 H 0.138 0.862 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -9.751 6.888 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.202 4.202 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.096 0.904 9 N -0.151 5.151 10 C 0.015 3.985 11 C 0.340 3.660 12 O -0.439 6.439 13 O -0.328 6.328 14 C 0.261 3.739 15 O -0.526 6.526 16 C -0.226 4.226 17 C -0.071 4.071 18 C -0.165 4.165 19 C -0.195 4.195 20 C -0.204 4.204 21 H 0.088 0.912 22 H 0.141 0.859 23 H 0.140 0.860 24 H 0.274 0.726 25 H 0.155 0.845 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.470 -9.582 6.541 12.433 hybrid contribution -0.143 1.167 -1.002 1.545 sum -4.613 -8.415 5.539 11.080 Atomic orbital electron populations 1.69853 1.06939 1.29033 1.46869 1.26067 0.96211 1.02524 0.95423 0.84845 0.78224 0.76565 0.78413 1.19775 1.20796 1.18080 1.19692 0.97341 0.85379 1.44717 0.90375 1.43502 1.20824 1.05206 1.45577 1.20911 0.80041 1.06045 0.91488 1.23764 0.84380 0.69653 0.88215 1.90611 1.86599 1.47111 1.19551 1.84442 1.16609 1.85407 1.46379 1.19032 0.86804 0.84863 0.83215 1.90549 1.28881 1.87567 1.45625 1.22551 1.02107 0.91977 1.05961 1.23049 0.96922 0.92854 0.94282 1.21313 1.04862 0.88007 1.02269 1.23120 0.96479 0.96778 1.03168 1.23081 1.00049 1.01213 0.96012 0.91220 0.85930 0.86004 0.72631 0.84472 0.88045 0.85122 0.88940 0.85813 0.86041 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.53 9.28 21.69 0.20 -46.33 16 2 C 0.00 -0.01 4.88 84.97 0.41 0.41 16 3 Si 1.00 42.27 29.60 68.60 2.03 44.30 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.34 -19.96 9.34 84.12 0.79 -19.18 16 8 H 0.08 4.90 7.37 -2.91 -0.02 4.88 16 9 N -0.43 -23.18 2.17 -643.87 -1.40 -24.58 16 10 C 0.14 6.13 4.84 85.63 0.41 6.54 16 11 C 0.50 21.91 6.24 71.24 0.44 22.35 16 12 O -0.55 -29.42 16.80 21.96 0.37 -29.05 16 13 O -0.52 -17.33 13.42 -51.43 -0.69 -18.02 16 14 C 0.47 24.88 7.35 86.52 0.64 25.51 16 15 O -0.64 -39.03 15.86 -4.23 -0.07 -39.10 16 16 C -0.21 -8.30 8.74 23.40 0.20 -8.09 16 17 C -0.05 -1.77 9.24 24.53 0.23 -1.54 16 18 C -0.15 -3.58 6.01 -11.54 -0.07 -3.65 16 19 C -0.16 -3.04 10.24 30.62 0.31 -2.73 16 20 C -0.17 -3.45 10.24 30.62 0.31 -3.14 16 21 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 22 H 0.12 4.18 6.46 -2.39 -0.02 4.16 16 23 H 0.12 5.46 6.34 -2.39 -0.02 5.44 16 24 H 0.41 10.34 9.10 -74.06 -0.67 9.67 16 25 H 0.14 4.65 6.25 -2.91 -0.02 4.63 16 26 H 0.10 3.99 7.49 -2.91 -0.02 3.96 16 27 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -76.83 277.59 4.62 -72.22 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.49 Total: 24.07 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 3.68 Total: 16.49 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.20 Total: -70.90 kcal Atomic # 8 Polarization: -85.78 SS G_CDS: -0.39 Total: -86.17 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -76.83 4.62 -72.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.235 kcal (2) G-P(sol) polarization free energy of solvation -76.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds