Wall clock time and date at job start Thu Apr 9 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86809 * 120.00008 * 2 1 4 4 H 1.48499 * 109.46980 * 265.03646 * 3 2 1 5 5 H 1.48493 * 109.46731 * 25.03405 * 3 2 1 6 6 H 1.48498 * 109.47036 * 145.03500 * 3 2 1 7 7 C 1.40046 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00266 * 177.63984 * 7 2 1 9 9 C 1.46375 * 119.99797 * 357.63775 * 7 2 1 10 10 O 1.21682 * 120.00498 * 351.16249 * 9 7 2 11 11 N 1.34783 * 119.99549 * 171.16502 * 9 7 2 12 12 C 1.47269 * 121.00737 * 3.19554 * 11 9 7 13 13 C 1.53304 * 108.28863 * 229.74001 * 12 11 9 14 14 O 1.42952 * 109.36126 * 307.28502 * 13 12 11 15 15 C 1.43060 * 114.13113 * 62.91124 * 14 13 12 16 16 C 1.46640 * 121.00107 * 183.21916 * 11 9 7 17 17 C 1.53454 * 110.06638 * 252.13524 * 16 11 9 18 18 C 1.54384 * 106.48125 * 119.52186 * 17 16 11 19 19 C 1.55007 * 104.16679 * 336.48550 * 18 17 16 20 20 C 1.53827 * 109.89501 * 9.77295 * 16 11 9 21 21 H 0.97001 * 119.99796 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.70120 * 349.43462 * 12 11 9 23 23 H 1.08999 * 109.70407 * 110.04252 * 12 11 9 24 24 H 1.09000 * 109.48876 * 67.24532 * 13 12 11 25 25 H 1.09001 * 109.49332 * 187.29195 * 13 12 11 26 26 H 1.08998 * 109.50985 * 178.43049 * 15 14 13 27 27 H 1.09003 * 109.50381 * 58.29834 * 15 14 13 28 28 H 1.08999 * 110.05905 * 238.78873 * 17 16 11 29 29 H 1.08993 * 110.06147 * 0.25173 * 17 16 11 30 30 H 1.09002 * 110.48616 * 95.13676 * 18 17 16 31 31 H 1.09002 * 110.48208 * 217.76592 * 18 17 16 32 32 H 1.09000 * 110.71019 * 279.32028 * 19 18 17 33 33 H 1.08994 * 110.91487 * 156.06485 * 19 18 17 34 34 H 1.08993 * 110.50604 * 22.45992 * 20 16 11 35 35 H 1.09000 * 110.50281 * 145.01124 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5931 1.9859 -1.3948 5 1 1.3896 2.6806 0.5924 6 1 3.4819 1.4728 0.8023 7 6 2.0070 -1.2128 -0.0005 8 1 3.0863 -1.2133 -0.0391 9 6 1.2760 -2.4799 0.0511 10 8 0.0765 -2.4826 0.2561 11 7 1.9316 -3.6438 -0.1282 12 6 3.3930 -3.6715 -0.3081 13 6 3.7096 -4.5236 -1.5426 14 8 3.0691 -5.7954 -1.4177 15 6 1.6407 -5.7291 -1.3741 16 6 1.2111 -4.9208 -0.1506 17 6 1.4982 -5.7100 1.1337 18 6 0.1383 -5.9144 1.8354 19 6 -0.7470 -4.7654 1.2891 20 6 -0.3053 -4.6657 -0.1933 21 1 -0.4850 0.8401 0.0004 22 1 3.7642 -2.6575 -0.4566 23 1 3.8633 -4.1105 0.5717 24 1 3.3438 -4.0185 -2.4366 25 1 4.7876 -4.6650 -1.6202 26 1 1.2314 -6.7371 -1.3067 27 1 1.2711 -5.2452 -2.2782 28 1 1.9412 -6.6752 0.8883 29 1 2.1701 -5.1434 1.7783 30 1 -0.2864 -6.8825 1.5696 31 1 0.2504 -5.8300 2.9164 32 1 -0.5398 -3.8346 1.8171 33 1 -1.8042 -5.0211 1.3605 34 1 -0.5142 -3.6714 -0.5878 35 1 -0.8037 -5.4263 -0.7942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334787783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:49 Heat of formation + Delta-G solvation = -55.551525 kcal Electronic energy + Delta-G solvation = -18611.539049 eV Core-core repulsion = 15803.501712 eV Total energy + Delta-G solvation = -2808.037337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94062 -36.99289 -35.75369 -33.19988 -32.57966 -30.18834 -27.92522 -27.38294 -25.98589 -24.20027 -21.95791 -20.82461 -19.73088 -18.10023 -16.62155 -15.96064 -15.64910 -15.17215 -14.95928 -14.72897 -14.19307 -13.59154 -13.39911 -12.91712 -12.64437 -12.15114 -11.88921 -11.59629 -11.26875 -11.09575 -10.98352 -10.64528 -10.45750 -10.42370 -10.31136 -10.23693 -9.94925 -9.85534 -9.57030 -9.33314 -8.84717 -7.26504 -6.96672 -6.18012 -4.70099 3.08934 3.16778 3.18997 4.00034 4.20614 4.43261 4.47488 5.23466 5.30709 5.44279 5.50482 5.62435 5.68587 5.75262 5.86550 5.94897 6.05383 6.19695 6.25816 6.28177 6.34561 6.42301 6.53613 6.59308 6.62625 6.80122 6.91861 7.29098 7.38880 7.48395 7.54577 7.67950 8.19008 8.33701 8.96509 9.37651 10.50229 10.68685 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.009825 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.409479 B = 2849.176356 C = 3521.266747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.091 3.909 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.562 3.438 10 O -0.552 6.552 11 N -0.631 5.631 12 C 0.087 3.913 13 C 0.047 3.953 14 O -0.389 6.389 15 C 0.064 3.936 16 C 0.148 3.852 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.103 4.103 20 C -0.155 4.155 21 H 0.269 0.731 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.154 0.846 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -7.099 -1.099 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.089 0.911 9 C 0.370 3.630 10 O -0.436 6.436 11 N -0.369 5.369 12 C -0.037 4.037 13 C -0.031 4.031 14 O -0.308 6.308 15 C -0.014 4.014 16 C 0.061 3.939 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.141 4.141 20 C -0.191 4.191 21 H 0.080 0.920 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.171 0.829 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.511 -7.146 -0.974 8.021 hybrid contribution 0.562 0.868 0.025 1.035 sum 4.073 -6.278 -0.949 7.543 Atomic orbital electron populations 1.69960 1.06972 1.27491 1.35147 1.25671 0.94608 1.00164 0.92494 0.86432 0.80190 0.81480 0.78967 1.19707 1.20462 1.18953 1.20983 0.93663 0.89377 1.54183 0.91120 1.18122 0.86742 0.81808 0.76344 1.90270 1.14898 1.85094 1.53383 1.48063 1.05250 1.05469 1.78108 1.22094 0.83872 1.01454 0.96322 1.22990 0.97189 0.84853 0.98080 1.87848 1.19234 1.29066 1.94650 1.22953 0.80977 1.00105 0.97359 1.21200 0.94193 0.85194 0.93328 1.22489 0.97311 0.99300 0.97127 1.22423 0.96214 0.98724 0.98945 1.22383 0.96767 0.98092 0.96815 1.23633 0.91193 1.06659 0.97591 0.91986 0.88191 0.93282 0.93077 0.89085 0.89165 0.93288 0.92424 0.91875 0.92880 0.92851 0.89988 0.93553 0.82927 0.95231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.74 11.88 55.55 0.66 -21.08 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 3 Si 0.90 19.42 29.56 -169.99 -5.02 14.39 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -14.56 8.82 -35.63 -0.31 -14.87 16 8 H 0.07 1.74 5.79 -52.48 -0.30 1.43 16 9 C 0.56 14.99 7.41 -12.98 -0.10 14.90 16 10 O -0.55 -15.89 9.14 5.20 0.05 -15.85 16 11 N -0.63 -14.03 2.60 -158.96 -0.41 -14.44 16 12 C 0.09 1.63 6.27 -3.46 -0.02 1.61 16 13 C 0.05 0.76 6.96 37.32 0.26 1.02 16 14 O -0.39 -6.84 10.65 -35.23 -0.38 -7.22 16 15 C 0.06 1.12 5.28 37.05 0.20 1.32 16 16 C 0.15 2.93 0.90 -131.18 -0.12 2.82 16 17 C -0.12 -2.25 5.94 -25.77 -0.15 -2.40 16 18 C -0.13 -2.17 6.85 -24.95 -0.17 -2.34 16 19 C -0.10 -2.09 6.47 -24.62 -0.16 -2.24 16 20 C -0.15 -3.26 5.28 -25.25 -0.13 -3.39 16 21 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 22 H 0.10 1.89 5.45 -51.93 -0.28 1.61 16 23 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 29 H 0.06 1.23 7.56 -51.93 -0.39 0.84 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.96 6.66 -51.93 -0.35 1.61 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.15 3.91 4.61 -57.14 -0.26 3.65 16 35 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -29.76 269.48 -6.74 -36.51 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.89 Total: 4.90 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.81 Total: -1.28 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.25 Total: -35.52 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.33 Total: -23.06 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.76 -6.74 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334787783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.045 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds