Wall clock time and date at job start Thu Apr 9 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86809 * 120.00008 * 2 1 4 4 H 1.48499 * 109.46980 * 265.03646 * 3 2 1 5 5 H 1.48493 * 109.46731 * 25.03405 * 3 2 1 6 6 H 1.48498 * 109.47036 * 145.03500 * 3 2 1 7 7 C 1.40046 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00266 * 177.63984 * 7 2 1 9 9 C 1.46375 * 119.99797 * 357.63775 * 7 2 1 10 10 O 1.21682 * 120.00498 * 351.16249 * 9 7 2 11 11 N 1.34783 * 119.99549 * 171.16502 * 9 7 2 12 12 C 1.47269 * 121.00737 * 3.19554 * 11 9 7 13 13 C 1.53304 * 108.28863 * 229.74001 * 12 11 9 14 14 O 1.42952 * 109.36126 * 307.28502 * 13 12 11 15 15 C 1.43060 * 114.13113 * 62.91124 * 14 13 12 16 16 C 1.46640 * 121.00107 * 183.21916 * 11 9 7 17 17 C 1.53454 * 110.06638 * 252.13524 * 16 11 9 18 18 C 1.54384 * 106.48125 * 119.52186 * 17 16 11 19 19 C 1.55007 * 104.16679 * 336.48550 * 18 17 16 20 20 C 1.53827 * 109.89501 * 9.77295 * 16 11 9 21 21 H 0.97001 * 119.99796 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.70120 * 349.43462 * 12 11 9 23 23 H 1.08999 * 109.70407 * 110.04252 * 12 11 9 24 24 H 1.09000 * 109.48876 * 67.24532 * 13 12 11 25 25 H 1.09001 * 109.49332 * 187.29195 * 13 12 11 26 26 H 1.08998 * 109.50985 * 178.43049 * 15 14 13 27 27 H 1.09003 * 109.50381 * 58.29834 * 15 14 13 28 28 H 1.08999 * 110.05905 * 238.78873 * 17 16 11 29 29 H 1.08993 * 110.06147 * 0.25173 * 17 16 11 30 30 H 1.09002 * 110.48616 * 95.13676 * 18 17 16 31 31 H 1.09002 * 110.48208 * 217.76592 * 18 17 16 32 32 H 1.09000 * 110.71019 * 279.32028 * 19 18 17 33 33 H 1.08994 * 110.91487 * 156.06485 * 19 18 17 34 34 H 1.08993 * 110.50604 * 22.45992 * 20 16 11 35 35 H 1.09000 * 110.50281 * 145.01124 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5931 1.9859 -1.3948 5 1 1.3896 2.6806 0.5924 6 1 3.4819 1.4728 0.8023 7 6 2.0070 -1.2128 -0.0005 8 1 3.0863 -1.2133 -0.0391 9 6 1.2760 -2.4799 0.0511 10 8 0.0765 -2.4826 0.2561 11 7 1.9316 -3.6438 -0.1282 12 6 3.3930 -3.6715 -0.3081 13 6 3.7096 -4.5236 -1.5426 14 8 3.0691 -5.7954 -1.4177 15 6 1.6407 -5.7291 -1.3741 16 6 1.2111 -4.9208 -0.1506 17 6 1.4982 -5.7100 1.1337 18 6 0.1383 -5.9144 1.8354 19 6 -0.7470 -4.7654 1.2891 20 6 -0.3053 -4.6657 -0.1933 21 1 -0.4850 0.8401 0.0004 22 1 3.7642 -2.6575 -0.4566 23 1 3.8633 -4.1105 0.5717 24 1 3.3438 -4.0185 -2.4366 25 1 4.7876 -4.6650 -1.6202 26 1 1.2314 -6.7371 -1.3067 27 1 1.2711 -5.2452 -2.2782 28 1 1.9412 -6.6752 0.8883 29 1 2.1701 -5.1434 1.7783 30 1 -0.2864 -6.8825 1.5696 31 1 0.2504 -5.8300 2.9164 32 1 -0.5398 -3.8346 1.8171 33 1 -1.8042 -5.0211 1.3605 34 1 -0.5142 -3.6714 -0.5878 35 1 -0.8037 -5.4263 -0.7942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334787783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:48 Heat of formation + Delta-G solvation = -75.423971 kcal Electronic energy + Delta-G solvation = -18612.400783 eV Core-core repulsion = 15803.501712 eV Total energy + Delta-G solvation = -2808.899070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54442 -38.63062 -37.42082 -34.90037 -34.59329 -31.65300 -29.50836 -29.10508 -27.80456 -25.69353 -23.44155 -22.62319 -21.31562 -19.78070 -18.40987 -17.75397 -17.19606 -16.66690 -16.53297 -16.28584 -15.89049 -15.17637 -14.94223 -14.61515 -14.33462 -13.80222 -13.62072 -13.17317 -12.95140 -12.80797 -12.64844 -12.17794 -12.04668 -11.95749 -11.95010 -11.80044 -11.62585 -11.33785 -11.24803 -10.89206 -10.75822 -9.11027 -8.82718 -8.15570 -6.77388 1.39231 1.40609 1.53836 2.22755 2.48703 2.67190 2.97741 3.60751 3.78694 3.80565 3.96568 4.17847 4.25038 4.34774 4.47391 4.52121 4.65010 4.66981 4.74690 4.84596 4.87606 4.94819 5.03594 5.11491 5.14180 5.21474 5.38581 5.42116 5.60736 5.77710 5.85246 6.15780 6.24262 6.55586 6.93166 7.48077 8.53299 8.71915 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.009825 C = 0.007950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.409479 B = 2849.176356 C = 3521.266747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.544 3.456 10 O -0.584 6.584 11 N -0.636 5.636 12 C 0.082 3.918 13 C 0.052 3.948 14 O -0.388 6.388 15 C 0.069 3.931 16 C 0.138 3.862 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.153 4.153 21 H 0.272 0.728 22 H 0.093 0.907 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -8.523 -1.376 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.350 3.650 10 O -0.471 6.471 11 N -0.373 5.373 12 C -0.042 4.042 13 C -0.025 4.025 14 O -0.306 6.306 15 C -0.009 4.009 16 C 0.052 3.948 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.189 4.189 21 H 0.082 0.918 22 H 0.111 0.889 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.332 -8.610 -1.260 10.205 hybrid contribution -0.026 1.252 0.106 1.257 sum 5.306 -7.357 -1.153 9.144 Atomic orbital electron populations 1.70122 1.09134 1.28711 1.36873 1.26770 0.95413 1.04299 0.91373 0.85196 0.78738 0.75906 0.79519 1.18514 1.20226 1.17713 1.21485 0.94660 0.90214 1.54581 0.89596 1.18433 0.86685 0.83391 0.76470 1.90307 1.16212 1.86242 1.54350 1.47978 1.06814 1.05322 1.77158 1.22280 0.81776 1.01943 0.98157 1.23063 0.99297 0.83983 0.96178 1.87855 1.18956 1.29379 1.94432 1.22959 0.81275 1.01112 0.95537 1.21446 0.93125 0.84672 0.95569 1.22429 0.97574 0.99799 0.95781 1.22385 0.94913 0.98664 0.99236 1.22269 0.98305 0.97345 0.96133 1.23348 0.92919 1.04600 0.98076 0.91771 0.88859 0.92245 0.93752 0.85169 0.86112 0.94224 0.89822 0.93721 0.89628 0.92094 0.94768 0.92309 0.87687 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.43 11.88 21.83 0.26 -48.17 16 2 C 0.04 1.99 5.50 85.30 0.47 2.46 16 3 Si 0.99 40.30 29.56 68.60 2.03 42.33 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.57 -31.36 8.82 24.83 0.22 -31.14 16 8 H 0.09 4.26 5.79 -2.91 -0.02 4.24 16 9 C 0.54 30.15 7.41 86.36 0.64 30.79 16 10 O -0.58 -35.65 9.14 -4.29 -0.04 -35.69 16 11 N -0.64 -28.49 2.60 -775.05 -2.01 -30.50 16 12 C 0.08 2.98 6.27 86.33 0.54 3.52 16 13 C 0.05 1.57 6.96 72.08 0.50 2.07 16 14 O -0.39 -12.36 10.65 -148.98 -1.59 -13.94 16 15 C 0.07 2.24 5.28 71.91 0.38 2.62 16 16 C 0.14 5.34 0.90 3.94 0.00 5.35 16 17 C -0.12 -4.01 5.94 31.22 0.19 -3.83 16 18 C -0.11 -3.71 6.85 31.75 0.22 -3.49 16 19 C -0.10 -4.20 6.47 31.96 0.21 -3.99 16 20 C -0.15 -6.48 5.28 31.56 0.17 -6.32 16 21 H 0.27 14.77 8.29 -92.71 -0.77 14.00 16 22 H 0.09 3.48 5.45 -2.39 -0.01 3.47 16 23 H 0.06 2.03 7.87 -2.39 -0.02 2.01 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.12 3.22 8.08 -2.39 -0.02 3.20 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 2.45 7.65 -2.39 -0.02 2.43 16 29 H 0.04 1.68 7.56 -2.39 -0.02 1.67 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 1.71 6.66 -2.39 -0.02 1.69 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 5.67 4.61 -84.91 -0.39 5.28 16 35 H 0.05 2.01 7.85 -2.39 -0.02 1.99 16 Total: -1.00 -67.81 269.48 2.88 -64.92 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.70 Total: 23.01 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 3.53 Total: -1.96 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.75 Total: -78.67 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.63 Total: -49.63 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -67.81 2.88 -64.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334787783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.500 kcal (2) G-P(sol) polarization free energy of solvation -67.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds