Wall clock time and date at job start Thu Apr 9 2020 12:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47062 * 270.00523 * 3 2 1 5 5 H 1.48509 * 109.46648 * 29.99872 * 3 2 1 6 6 H 1.48494 * 109.47579 * 149.99777 * 3 2 1 7 7 C 1.38959 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99163 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00183 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99726 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00217 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99651 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.70164 * 300.57474 * 12 10 9 14 14 C 1.53453 * 109.70047 * 180.02562 * 12 10 9 15 15 C 1.52329 * 109.56615 * 126.07541 * 14 12 10 16 16 C 1.52955 * 110.08981 * 44.46934 * 15 14 12 17 17 C 1.53329 * 109.55039 * 78.46807 * 16 15 14 18 18 C 1.53372 * 107.97939 * 287.75064 * 17 16 15 19 19 C 1.50239 * 109.87266 * 316.59459 * 18 17 16 20 20 O 1.20760 * 120.12497 * 292.61967 * 19 18 17 21 21 C 1.51198 * 119.75835 * 112.60389 * 19 18 17 22 22 H 0.96996 * 119.99882 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00184 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.45269 * 6.04402 * 14 12 10 25 25 H 1.09001 * 109.45381 * 246.10049 * 14 12 10 26 26 H 1.09002 * 109.34704 * 164.62123 * 15 14 12 27 27 H 1.09000 * 109.34853 * 284.32029 * 15 14 12 28 28 H 1.09001 * 109.47975 * 198.26311 * 16 15 14 29 29 H 1.09003 * 109.48038 * 318.28458 * 16 15 14 30 30 H 1.08999 * 109.79615 * 168.13055 * 17 16 15 31 31 H 1.09006 * 109.82931 * 47.38939 * 17 16 15 32 32 H 1.08998 * 109.40292 * 196.47280 * 18 17 16 33 33 H 1.08995 * 109.33458 * 76.67283 * 18 17 16 34 34 H 1.08997 * 109.91339 * 168.94672 * 21 19 18 35 35 H 1.08999 * 109.98080 * 47.81528 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0021 11 8 3.4473 -3.4210 0.0021 12 6 5.5608 -2.3705 0.0021 13 1 5.9283 -1.8493 -0.8819 14 6 6.0782 -3.8152 0.0028 15 6 7.0458 -4.0111 -1.1572 16 6 8.0100 -2.8268 -1.2428 17 6 9.1043 -2.9782 -0.1796 18 6 8.4739 -2.7026 1.1912 19 6 7.5741 -1.5024 1.1075 20 8 8.0420 -0.4067 0.9102 21 6 6.0805 -1.6714 1.2709 22 1 -0.4850 0.8400 0.0004 23 1 3.8649 -0.3633 0.0007 24 1 5.2383 -4.5016 -0.1052 25 1 6.5926 -4.0162 0.9425 26 1 7.6137 -4.9286 -1.0028 27 1 6.4834 -4.0868 -2.0879 28 1 8.4696 -2.8028 -2.2309 29 1 7.4626 -1.8994 -1.0740 30 1 9.9037 -2.2615 -0.3679 31 1 9.5054 -3.9915 -0.2034 32 1 9.2616 -2.5145 1.9208 33 1 7.8921 -3.5704 1.5019 34 1 5.6061 -0.6959 1.3781 35 1 5.8687 -2.2853 2.1463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335506458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:51 Heat of formation + Delta-G solvation = -81.134842 kcal Electronic energy + Delta-G solvation = -17788.206306 eV Core-core repulsion = 14979.059593 eV Total energy + Delta-G solvation = -2809.146712 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54570 -38.47134 -36.65373 -34.08683 -33.09663 -31.69075 -31.09822 -27.05794 -26.13611 -24.31466 -22.09614 -20.63217 -19.31376 -18.93357 -18.16177 -16.63115 -15.72863 -15.60975 -15.12847 -14.85766 -14.68726 -14.05829 -13.89656 -13.22510 -13.11576 -12.87903 -12.50880 -12.38966 -12.14366 -11.78531 -11.55516 -11.45627 -11.27692 -10.95911 -10.62400 -10.57989 -10.22836 -9.99562 -9.88904 -9.61668 -9.53901 -8.50428 -8.22164 -6.34867 -3.86326 1.95879 3.03257 3.07848 3.15508 3.64448 4.06499 4.08308 4.53604 4.69895 4.73562 4.82035 4.95536 5.11577 5.20220 5.21024 5.35351 5.35935 5.50919 5.58783 5.62636 5.82434 5.85849 5.92742 5.97929 6.01086 6.07509 6.21782 6.33346 6.49211 6.68730 7.52289 7.52987 8.10801 8.54457 8.90396 9.38841 9.77040 10.77846 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031532 B = 0.007410 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.784083 B = 3777.870561 C = 4321.603738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.044 3.956 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.584 5.584 10 C 0.454 3.546 11 O -0.573 6.573 12 C -0.099 4.099 13 H 0.095 0.905 14 C -0.126 4.126 15 C -0.118 4.118 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.181 4.181 19 C 0.369 3.631 20 O -0.464 6.464 21 C -0.165 4.165 22 H 0.274 0.726 23 H 0.371 0.629 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.273 -3.977 0.850 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.159 4.159 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.138 0.862 9 N -0.222 5.222 10 C 0.240 3.760 11 O -0.456 6.456 12 C -0.121 4.121 13 H 0.113 0.887 14 C -0.163 4.163 15 C -0.155 4.155 16 C -0.180 4.180 17 C -0.141 4.141 18 C -0.218 4.218 19 C 0.245 3.755 20 O -0.338 6.338 21 C -0.204 4.204 22 H 0.085 0.915 23 H 0.204 0.796 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.884 -3.968 0.741 17.360 hybrid contribution 0.470 1.442 0.058 1.518 sum 17.354 -2.526 0.799 17.555 Atomic orbital electron populations 1.69617 1.05644 1.27608 1.48895 1.25041 0.95485 0.97985 0.97419 0.86739 0.79942 0.84086 0.79142 1.19474 1.19995 1.19313 1.19464 0.79251 0.96659 1.48285 0.86159 1.42244 1.07572 1.06286 1.66109 1.19567 0.88103 0.84397 0.83977 1.90520 1.69206 1.30941 1.54955 1.21597 0.95033 0.98087 0.97396 0.88710 1.21917 1.00065 0.95815 0.98533 1.21508 0.97008 0.97589 0.99425 1.22092 0.96991 0.99792 0.99077 1.21584 0.97702 1.02184 0.92674 1.22420 1.00246 0.99070 1.00112 1.24626 0.91861 0.89374 0.69599 1.90392 1.78753 1.28970 1.35645 1.22658 0.93890 1.03791 1.00016 0.91529 0.79551 0.88452 0.91040 0.91661 0.91739 0.91734 0.91034 0.91512 0.90671 0.89346 0.88315 0.89152 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 2 C 0.04 1.21 5.50 -17.46 -0.10 1.12 16 3 Si 0.87 19.69 27.74 -169.99 -4.71 14.97 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.59 6.52 56.52 0.37 -5.23 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.58 -13.92 4.95 -10.96 -0.05 -13.97 16 10 C 0.45 10.05 7.12 -10.98 -0.08 9.97 16 11 O -0.57 -14.80 14.74 5.55 0.08 -14.72 16 12 C -0.10 -1.61 2.15 -91.06 -0.20 -1.80 16 13 H 0.10 1.47 5.56 -51.93 -0.29 1.18 16 14 C -0.13 -1.74 5.04 -26.84 -0.14 -1.87 16 15 C -0.12 -1.34 5.63 -27.10 -0.15 -1.49 16 16 C -0.14 -1.56 5.39 -26.58 -0.14 -1.70 16 17 C -0.10 -0.98 5.94 -26.37 -0.16 -1.14 16 18 C -0.18 -1.80 5.42 -27.91 -0.15 -1.96 16 19 C 0.37 4.93 4.29 -29.01 -0.12 4.81 16 20 O -0.46 -7.62 17.81 6.00 0.11 -7.51 16 21 C -0.17 -2.39 5.10 -27.17 -0.14 -2.53 16 22 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 23 H 0.37 8.00 5.23 -40.82 -0.21 7.79 16 24 H 0.10 1.62 6.33 -51.93 -0.33 1.30 16 25 H 0.07 0.82 4.49 -51.93 -0.23 0.59 16 26 H 0.06 0.62 7.83 -51.93 -0.41 0.22 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.92 3.81 -51.93 -0.20 0.72 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.87 5.20 -51.93 -0.27 0.60 16 34 H 0.09 1.42 7.50 -51.93 -0.39 1.03 16 35 H 0.10 1.32 7.97 -51.93 -0.41 0.90 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -32.13 271.73 -5.63 -37.77 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.40 Total: 9.57 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.52 Total: -5.41 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.72 Total: -38.76 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.19 Total: -22.23 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.13 -5.63 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335506458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.370 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds