Wall clock time and date at job start Thu Apr 9 2020 12:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86808 * 119.99655 * 2 1 4 4 H 1.48504 * 109.46788 * 269.99986 * 3 2 1 5 5 H 1.48508 * 109.47022 * 29.99467 * 3 2 1 6 6 H 1.48492 * 109.47272 * 149.99528 * 3 2 1 7 7 C 1.40050 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99611 * 0.02562 * 7 2 1 10 10 O 1.21679 * 120.00287 * 354.99618 * 9 7 2 11 11 N 1.34772 * 119.99530 * 175.27730 * 9 7 2 12 12 C 1.47159 * 121.02020 * 184.66958 * 11 9 7 13 13 C 1.52871 * 108.70520 * 230.83547 * 12 11 9 14 14 O 1.43036 * 109.29453 * 307.57407 * 13 12 11 15 15 C 1.42558 * 114.22002 * 61.72057 * 14 13 12 16 16 C 1.53978 * 109.86414 * 59.55343 * 15 14 13 17 17 C 1.54955 * 104.11741 * 96.04205 * 16 15 14 18 18 C 1.54916 * 102.78417 * 37.69291 * 17 16 15 19 19 C 1.53553 * 110.12368 * 177.05605 * 15 14 13 20 20 C 1.47237 * 121.02358 * 4.94267 * 11 9 7 21 21 H 0.96994 * 120.00604 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.63159 * 350.58384 * 12 11 9 23 23 H 1.08997 * 109.64124 * 111.19161 * 12 11 9 24 24 H 1.08998 * 109.58549 * 187.56624 * 13 12 11 25 25 H 1.09002 * 109.41164 * 67.48160 * 13 12 11 26 26 H 1.09002 * 110.49998 * 214.70111 * 16 15 14 27 27 H 1.09000 * 110.49740 * 337.38055 * 16 15 14 28 28 H 1.09001 * 110.75165 * 279.37291 * 17 16 15 29 29 H 1.09000 * 110.90636 * 156.08965 * 17 16 15 30 30 H 1.08999 * 110.48597 * 203.55202 * 18 17 16 31 31 H 1.08998 * 110.59791 * 80.96915 * 18 17 16 32 32 H 1.08997 * 110.06007 * 359.88679 * 19 15 14 33 33 H 1.09010 * 110.05191 * 121.32464 * 19 15 14 34 34 H 1.08998 * 109.68528 * 249.77631 * 20 11 9 35 35 H 1.08996 * 109.67883 * 10.33942 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4379 2.6528 0.7000 6 1 3.5381 1.4404 0.7001 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0619 -2.4825 0.0920 11 7 1.9458 -3.6456 -0.0950 12 6 1.2292 -4.9266 -0.1997 13 6 1.7895 -5.8888 0.8478 14 8 3.2125 -5.9526 0.7178 15 6 3.8762 -4.7102 0.9376 16 6 3.5719 -4.1986 2.3576 17 6 4.7825 -4.6760 3.1988 18 6 5.9713 -4.4954 2.2220 19 6 5.3972 -4.9006 0.8477 20 6 3.4179 -3.6764 -0.0920 21 1 -0.4851 0.8399 -0.0004 22 1 0.1663 -4.7676 -0.0178 23 1 1.3746 -5.3476 -1.1945 24 1 1.3653 -6.8814 0.6962 25 1 1.5307 -5.5305 1.8441 26 1 3.5068 -3.1105 2.3656 27 1 2.6485 -4.6400 2.7327 28 1 4.6690 -5.7232 3.4794 29 1 4.9115 -4.0525 4.0836 30 1 6.7961 -5.1517 2.4994 31 1 6.3004 -3.4564 2.2066 32 1 5.6316 -5.9441 0.6377 33 1 5.8084 -4.2609 0.0667 34 1 3.7813 -3.9567 -1.0806 35 1 3.8050 -2.6937 0.1772 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335827830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:59 Heat of formation + Delta-G solvation = -84.112864 kcal Electronic energy + Delta-G solvation = -18204.564449 eV Core-core repulsion = 15395.288600 eV Total energy + Delta-G solvation = -2809.275849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92750 -37.08506 -35.63307 -33.37001 -32.48544 -30.50344 -28.52933 -27.59633 -25.97416 -24.21684 -22.55867 -20.48993 -19.43672 -18.66448 -16.89744 -16.04860 -15.86099 -15.29833 -14.87068 -14.50710 -14.17958 -13.62685 -13.52557 -13.17695 -12.80788 -12.42421 -11.71972 -11.57185 -11.40888 -11.18679 -11.02477 -11.00337 -10.96440 -10.85481 -10.49618 -10.35402 -10.27778 -10.09738 -9.86120 -9.30254 -8.87848 -7.63721 -7.18928 -6.24058 -4.69218 3.10665 3.17689 3.20530 4.01542 4.09693 4.43440 4.52847 4.82996 4.90000 5.10930 5.40667 5.51468 5.59479 5.62961 5.66203 5.78562 5.83169 5.92342 6.02471 6.04302 6.08786 6.11630 6.22682 6.31341 6.38240 6.47949 6.49750 6.58545 6.67791 7.40483 7.51376 7.68663 8.07288 8.30064 8.97714 9.38059 10.52908 10.71390 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.008898 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.042546 B = 3145.951565 C = 3852.041646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.578 6.578 11 N -0.643 5.643 12 C 0.086 3.914 13 C 0.046 3.954 14 O -0.378 6.378 15 C 0.100 3.900 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.109 4.109 20 C 0.106 3.894 21 H 0.269 0.731 22 H 0.091 0.909 23 H 0.048 0.952 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.058 -7.496 3.234 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.090 0.910 9 C 0.368 3.632 10 O -0.460 6.460 11 N -0.382 5.382 12 C -0.039 4.039 13 C -0.031 4.031 14 O -0.297 6.297 15 C 0.059 3.941 16 C -0.182 4.182 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.019 4.019 21 H 0.080 0.920 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.276 -7.531 3.230 12.377 hybrid contribution 0.281 0.960 -0.036 1.001 sum 9.557 -6.571 3.194 12.030 Atomic orbital electron populations 1.70007 1.07077 1.27366 1.35150 1.25726 0.94611 1.00295 0.92561 0.86402 0.80212 0.81464 0.78910 1.19682 1.20402 1.18808 1.20939 0.93522 0.89175 1.54365 0.91015 1.18243 0.86867 0.82061 0.76061 1.90587 1.14369 1.85987 1.55076 1.48264 1.04435 1.05613 1.79868 1.21702 0.99037 0.85759 0.97375 1.22937 0.81366 0.99790 0.99055 1.87819 1.18793 1.31283 1.91828 1.22304 0.92216 0.84864 0.94671 1.22907 0.98268 1.02200 0.94799 1.22472 0.94936 1.00830 0.97663 1.22361 0.97590 1.01310 0.94685 1.22069 0.92332 1.02409 0.97849 1.22097 0.83140 0.99674 0.96959 0.92036 0.89119 0.93362 0.89078 0.92813 0.89984 0.91160 0.91816 0.91836 0.91831 0.91383 0.90694 0.90672 0.93428 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.85 11.84 55.55 0.66 -22.19 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.87 29.56 -169.99 -5.02 14.84 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.54 -15.10 8.85 -35.63 -0.32 -15.41 16 8 H 0.07 1.82 5.77 -52.49 -0.30 1.51 16 9 C 0.56 15.99 7.63 -12.99 -0.10 15.89 16 10 O -0.58 -18.68 14.51 5.21 0.08 -18.61 16 11 N -0.64 -14.93 2.85 -174.35 -0.50 -15.43 16 12 C 0.09 1.74 6.62 -3.75 -0.02 1.71 16 13 C 0.05 0.78 6.70 37.09 0.25 1.03 16 14 O -0.38 -6.58 10.15 -35.23 -0.36 -6.94 16 15 C 0.10 1.67 0.98 -89.86 -0.09 1.58 16 16 C -0.14 -2.39 5.69 -25.19 -0.14 -2.53 16 17 C -0.12 -1.60 6.91 -24.69 -0.17 -1.77 16 18 C -0.12 -1.46 6.84 -25.01 -0.17 -1.63 16 19 C -0.11 -1.46 6.27 -25.74 -0.16 -1.63 16 20 C 0.11 2.06 4.84 -3.68 -0.02 2.04 16 21 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 22 H 0.09 2.00 7.06 -51.93 -0.37 1.63 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.94 5.97 -51.93 -0.31 0.63 16 26 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 27 H 0.07 1.23 5.74 -51.93 -0.30 0.94 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 33 H 0.07 0.94 7.66 -51.92 -0.40 0.54 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.97 5.31 -51.93 -0.28 1.69 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -33.20 275.49 -6.89 -40.09 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.86 Total: 2.48 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.04 Total: 1.61 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.16 Total: -37.62 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.28 Total: -25.55 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.20 -6.89 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335827830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.028 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds