Wall clock time and date at job start Thu Apr 9 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00417 * 2 1 4 4 H 1.48502 * 109.46955 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47068 * 119.99842 * 3 2 1 6 6 H 1.48492 * 109.47120 * 240.00114 * 3 2 1 7 7 C 1.38815 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00044 * 149.79162 * 7 2 1 9 9 N 1.36938 * 119.99995 * 329.78722 * 7 2 1 10 10 C 1.47152 * 120.98427 * 334.65409 * 9 7 2 11 11 C 1.53292 * 108.37999 * 230.50949 * 10 9 7 12 12 O 1.42959 * 109.22692 * 307.69606 * 11 10 9 13 13 C 1.42959 * 114.16885 * 62.58080 * 12 11 10 14 14 C 1.47151 * 120.97889 * 154.36437 * 9 7 2 15 15 H 1.09001 * 109.68589 * 249.21182 * 14 9 7 16 16 C 1.53001 * 109.68328 * 9.77020 * 14 9 7 17 17 H 1.09003 * 109.96920 * 303.89061 * 16 14 9 18 18 C 1.54275 * 109.98570 * 65.15608 * 16 14 9 19 19 C 1.54984 * 103.75024 * 142.47502 * 18 16 14 20 20 C 1.54893 * 102.33358 * 322.91580 * 19 18 16 21 21 C 1.51446 * 109.98363 * 182.57738 * 16 14 9 22 22 O 1.20761 * 126.34729 * 60.98624 * 21 16 14 23 23 H 0.96996 * 120.00296 * 175.14868 * 1 2 3 24 24 H 1.09006 * 109.67810 * 350.22652 * 10 9 7 25 25 H 1.08999 * 109.68288 * 110.74835 * 10 9 7 26 26 H 1.08999 * 109.51522 * 67.62181 * 11 10 9 27 27 H 1.09004 * 109.51412 * 187.77256 * 11 10 9 28 28 H 1.09003 * 109.51030 * 57.34281 * 13 12 11 29 29 H 1.08998 * 109.51535 * 177.44863 * 13 12 11 30 30 H 1.09002 * 110.57502 * 261.04117 * 18 16 14 31 31 H 1.09002 * 110.57149 * 23.91199 * 18 16 14 32 32 H 1.08993 * 110.83580 * 81.12600 * 19 18 16 33 33 H 1.09005 * 110.83392 * 204.70676 * 19 18 16 34 34 H 1.09000 * 110.44369 * 156.36837 * 20 19 18 35 35 H 1.09001 * 110.43997 * 278.88719 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 2.9802 -1.2656 -0.4712 9 7 1.4649 -2.3078 0.5957 10 6 0.4784 -2.1751 1.6795 11 6 0.9272 -3.0546 2.8521 12 8 1.1752 -4.3803 2.3782 13 6 2.2298 -4.4708 1.4173 14 6 1.8436 -3.6637 0.1673 15 1 1.0005 -4.1392 -0.3340 16 6 3.0363 -3.5881 -0.7880 17 1 2.7970 -2.9407 -1.6317 18 6 4.2748 -3.0478 -0.0436 19 6 5.4489 -3.8642 -0.6409 20 6 4.8137 -5.2634 -0.8355 21 6 3.3917 -4.9746 -1.2829 22 8 2.6766 -5.7138 -1.9158 23 1 -0.4850 -0.8370 -0.0710 24 1 0.4237 -1.1349 2.0007 25 1 -0.4999 -2.5026 1.3276 26 1 1.8402 -2.6460 3.2851 27 1 0.1436 -3.0793 3.6094 28 1 3.1476 -4.0673 1.8451 29 1 2.3840 -5.5143 1.1430 30 1 4.4075 -1.9843 -0.2425 31 1 4.1875 -3.2301 1.0276 32 1 5.7654 -3.4459 -1.5963 33 1 6.2837 -3.9113 0.0584 34 1 5.3489 -5.8209 -1.6042 35 1 4.8124 -5.8149 0.1047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375229369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:30 Heat of formation + Delta-G solvation = -77.076086 kcal Electronic energy + Delta-G solvation = -18436.440654 eV Core-core repulsion = 15627.469942 eV Total energy + Delta-G solvation = -2808.970712 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49188 -39.80380 -37.48328 -36.37313 -33.58135 -32.26825 -29.12247 -28.74068 -27.52114 -25.16732 -24.29154 -22.40733 -20.98792 -20.18236 -18.99794 -18.04290 -17.03618 -16.81128 -16.48788 -15.96112 -15.82810 -15.62874 -15.38955 -15.22787 -14.63219 -14.40817 -14.03779 -13.60476 -13.27005 -12.86372 -12.62860 -12.46943 -12.15700 -11.96850 -11.93237 -11.73541 -11.72024 -11.56825 -11.06456 -10.76571 -10.44611 -10.31509 -8.95250 -8.24031 -5.33542 0.84470 1.60595 1.67589 1.85180 2.61952 2.86398 2.98779 3.26249 3.45569 3.64138 3.75394 3.97156 4.00419 4.15637 4.22102 4.31444 4.39486 4.44729 4.50657 4.60799 4.73029 4.78164 4.84939 4.94475 4.98416 5.05071 5.16283 5.21278 5.34189 5.47392 5.95561 6.16038 6.36421 6.44266 6.96110 7.76607 8.21622 9.00756 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.010641 C = 0.008455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.925991 B = 2630.626135 C = 3310.840691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.081 4.081 3 Si 1.109 2.891 4 H -0.302 1.302 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.090 0.910 9 N -0.606 5.606 10 C 0.123 3.877 11 C 0.056 3.944 12 O -0.401 6.401 13 C 0.052 3.948 14 C 0.150 3.850 15 H -0.006 1.006 16 C -0.140 4.140 17 H 0.077 0.923 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.168 4.168 21 C 0.371 3.629 22 O -0.489 6.489 23 H 0.247 0.753 24 H 0.063 0.937 25 H -0.004 1.004 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.921 -7.247 3.547 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.277 4.277 3 Si 0.934 3.066 4 H -0.229 1.229 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.481 4.481 8 H 0.107 0.893 9 N -0.332 5.332 10 C -0.003 4.003 11 C -0.022 4.022 12 O -0.320 6.320 13 C -0.025 4.025 14 C 0.044 3.956 15 H 0.011 0.989 16 C -0.160 4.160 17 H 0.095 0.905 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.205 4.205 21 C 0.249 3.751 22 O -0.365 6.365 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.299 -6.137 3.325 14.142 hybrid contribution -0.882 -1.145 -0.635 1.579 sum 11.417 -7.282 2.689 13.806 Atomic orbital electron populations 1.70925 1.08126 1.28798 1.50731 1.27148 0.96280 1.05009 0.99269 0.82943 0.73958 0.72133 0.77612 1.22916 1.19917 1.19993 1.20622 1.01557 0.89269 1.36610 0.89279 1.44512 1.49939 1.00927 1.37812 1.21496 0.90577 0.99149 0.89095 1.23082 1.01264 0.82329 0.95527 1.87798 1.55992 1.28620 1.59600 1.23355 0.90550 0.99889 0.88740 1.21106 0.93650 0.87107 0.93757 0.98869 1.22311 0.97568 0.96670 0.99429 0.90455 1.22491 0.91498 1.00386 0.99929 1.22516 0.97431 0.92277 1.02508 1.22922 0.92052 1.00542 1.04984 1.25603 0.90368 0.86361 0.72802 1.90364 1.59012 1.54045 1.33088 0.94324 0.91857 0.98608 0.92169 0.87281 0.90096 0.88689 0.90891 0.90112 0.90434 0.87332 0.87243 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 12.52 21.65 0.27 -57.03 16 2 C -0.08 -4.43 4.56 84.86 0.39 -4.05 16 3 Si 1.11 48.64 30.01 68.60 2.06 50.70 16 4 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.35 -18.15 8.14 84.03 0.68 -17.47 16 8 H 0.09 4.29 4.15 -2.91 -0.01 4.28 16 9 N -0.61 -29.53 2.85 -672.93 -1.92 -31.45 16 10 C 0.12 5.84 4.99 86.35 0.43 6.27 16 11 C 0.06 2.09 6.98 72.08 0.50 2.59 16 12 O -0.40 -15.49 10.74 -148.98 -1.60 -17.09 16 13 C 0.05 1.82 5.78 72.22 0.42 2.24 16 14 C 0.15 6.38 2.91 45.11 0.13 6.51 16 15 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 16 C -0.14 -5.04 2.11 -10.87 -0.02 -5.06 16 17 H 0.08 3.29 7.26 -2.39 -0.02 3.28 16 18 C -0.11 -3.00 5.15 31.71 0.16 -2.83 16 19 C -0.11 -2.05 6.95 31.92 0.22 -1.83 16 20 C -0.17 -3.29 6.72 30.86 0.21 -3.09 16 21 C 0.37 11.72 6.32 29.71 0.19 11.91 16 22 O -0.49 -19.15 17.99 -1.45 -0.03 -19.17 16 23 H 0.25 15.70 7.01 -92.71 -0.65 15.05 16 24 H 0.06 3.28 6.51 -2.38 -0.02 3.26 16 25 H 0.00 -0.21 7.88 -2.39 -0.02 -0.23 16 26 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.11 3.49 8.14 -2.38 -0.02 3.48 16 28 H 0.08 2.49 5.57 -2.39 -0.01 2.48 16 29 H 0.10 2.93 7.67 -2.39 -0.02 2.91 16 30 H 0.07 2.32 6.14 -2.39 -0.01 2.30 16 31 H 0.08 2.25 5.29 -2.39 -0.01 2.23 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -68.95 270.50 3.31 -65.64 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.21 Total: 13.21 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 3.31 Total: -4.81 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -1.65 Total: -88.48 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.63 Total: -36.26 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.06 Total: 50.70 kcal Total: -68.95 3.31 -65.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375229369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.438 kcal (2) G-P(sol) polarization free energy of solvation -68.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds