Wall clock time and date at job start Thu Apr 9 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47295 * 240.00016 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99940 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00061 * 341.77484 * 7 2 1 9 9 C 1.50702 * 119.99807 * 161.78346 * 7 2 1 10 10 H 1.08996 * 109.50400 * 54.51635 * 9 7 2 11 11 C 1.53119 * 109.50169 * 294.43486 * 9 7 2 12 12 C 1.53120 * 109.15793 * 182.40723 * 11 9 7 13 13 C 1.53038 * 109.28065 * 57.65412 * 12 11 9 14 14 N 1.46847 * 109.52390 * 300.82302 * 13 12 11 15 15 C 1.46896 * 111.00067 * 185.83855 * 14 13 12 16 16 H 1.09001 * 110.32887 * 64.65091 * 15 14 13 17 17 C 1.54493 * 110.36781 * 302.41169 * 15 14 13 18 18 C 1.54572 * 102.14495 * 225.81702 * 17 15 14 19 19 O 1.45833 * 104.44232 * 26.84749 * 18 17 15 20 20 C 1.34304 * 109.92379 * 329.32772 * 19 18 17 21 21 O 1.20829 * 125.22968 * 200.92985 * 20 19 18 22 22 C 1.46839 * 111.19919 * 61.73605 * 14 13 12 23 23 H 0.97000 * 119.99868 * 174.67299 * 1 2 3 24 24 H 1.09003 * 109.52370 * 302.31106 * 11 9 7 25 25 H 1.09000 * 109.52359 * 62.44107 * 11 9 7 26 26 H 1.09003 * 109.50102 * 177.59643 * 12 11 9 27 27 H 1.08995 * 109.50635 * 297.71077 * 12 11 9 28 28 H 1.09006 * 109.45743 * 60.83707 * 13 12 11 29 29 H 1.09002 * 109.45995 * 180.81249 * 13 12 11 30 30 H 1.08996 * 110.86966 * 343.98606 * 17 15 14 31 31 H 1.09004 * 110.86666 * 107.65581 * 17 15 14 32 32 H 1.09003 * 110.43868 * 145.59216 * 18 17 15 33 33 H 1.09000 * 110.43720 * 267.98240 * 18 17 15 34 34 H 1.09006 * 109.46328 * 178.24000 * 22 14 13 35 35 H 1.09009 * 109.46232 * 58.27605 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 1.5051 -2.1060 0.2916 9 6 3.4549 -1.2266 -0.4085 10 1 4.0187 -0.5151 0.1947 11 6 3.5781 -0.8529 -1.8883 12 6 5.0472 -0.9467 -2.3096 13 6 5.5605 -2.3632 -2.0408 14 7 5.4217 -2.6726 -0.6120 15 6 6.0309 -3.9705 -0.2928 16 1 7.1073 -3.9352 -0.4610 17 6 5.3901 -5.0892 -1.1441 18 6 5.1387 -6.1942 -0.0929 19 8 4.9918 -5.4723 1.1656 20 6 5.7342 -4.3534 1.1408 21 8 6.1091 -3.7439 2.1144 22 6 4.0143 -2.6349 -0.1949 23 1 -0.4850 -0.8364 -0.0780 24 1 2.9823 -1.5406 -2.4886 25 1 3.2197 0.1656 -2.0378 26 1 5.1358 -0.7232 -3.3728 27 1 5.6367 -0.2312 -1.7364 28 1 4.9795 -3.0769 -2.6251 29 1 6.6103 -2.4293 -2.3264 30 1 4.4521 -4.7524 -1.5854 31 1 6.0803 -5.4352 -1.9136 32 1 4.2254 -6.7414 -0.3268 33 1 5.9882 -6.8755 -0.0462 34 1 3.9411 -2.8986 0.8603 35 1 3.4406 -3.3474 -0.7877 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397581684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:59 Heat of formation + Delta-G solvation = -79.705745 kcal Electronic energy + Delta-G solvation = -18103.908013 eV Core-core repulsion = 15294.823271 eV Total energy + Delta-G solvation = -2809.084742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18944 -38.22623 -37.30257 -34.32456 -32.47694 -30.62787 -30.26617 -27.23137 -24.74246 -23.65619 -22.51626 -20.95530 -20.46744 -18.77254 -17.57898 -17.03982 -16.93626 -16.32112 -14.95211 -14.58602 -14.44778 -13.88127 -13.81243 -13.37367 -13.33965 -12.75958 -12.47262 -12.35873 -12.09573 -11.90088 -11.50639 -11.38476 -10.66995 -10.63601 -10.56130 -10.16233 -10.05959 -9.83198 -9.63313 -9.33062 -8.72531 -8.23346 -8.04645 -6.42388 -4.04249 2.14572 3.19209 3.42041 3.50679 3.66994 3.95727 3.99552 4.38830 4.54603 4.61706 4.68929 5.13052 5.24503 5.26963 5.37110 5.41834 5.47045 5.58808 5.77985 5.90700 6.04334 6.19792 6.28508 6.38456 6.57555 6.73102 6.79074 6.85705 7.19235 7.31926 7.35094 7.58064 7.62585 8.17613 8.39969 8.91261 9.62839 10.95781 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029311 B = 0.008101 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.054039 B = 3455.691306 C = 3751.633648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 1.041 2.959 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.600 4.600 8 H 0.054 0.946 9 C 0.028 3.972 10 H 0.031 0.969 11 C -0.125 4.125 12 C -0.121 4.121 13 C 0.063 3.937 14 N -0.517 5.517 15 C 0.026 3.974 16 H 0.119 0.881 17 C -0.195 4.195 18 C 0.058 3.942 19 O -0.348 6.348 20 C 0.491 3.509 21 O -0.438 6.438 22 C 0.069 3.931 23 H 0.267 0.733 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.651 -10.197 -6.470 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.170 4.170 3 Si 0.869 3.131 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.638 4.638 8 H 0.072 0.928 9 C 0.009 3.991 10 H 0.049 0.951 11 C -0.163 4.163 12 C -0.158 4.158 13 C -0.064 4.064 14 N -0.243 5.243 15 C -0.085 4.085 16 H 0.137 0.863 17 C -0.235 4.235 18 C -0.017 4.017 19 O -0.265 6.265 20 C 0.329 3.671 21 O -0.318 6.318 22 C -0.058 4.058 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.738 -7.971 -5.469 15.990 hybrid contribution -0.263 -2.439 -0.697 2.550 sum 12.475 -10.409 -6.166 17.378 Atomic orbital electron populations 1.70846 1.07168 1.30371 1.45590 1.25732 0.96005 1.02379 0.92856 0.84123 0.75426 0.76027 0.77497 1.21379 1.19910 1.20861 1.21924 0.94680 0.96587 1.50591 0.92779 1.18985 0.96703 0.91289 0.92124 0.95064 1.22138 0.92762 1.01904 0.99528 1.21688 0.98923 0.95419 0.99810 1.22068 0.99865 0.97688 0.86788 1.62213 1.19312 1.24386 1.18341 1.23100 1.02096 0.90649 0.92685 0.86342 1.23703 1.04014 0.96550 0.99198 1.24006 1.03894 0.93944 0.79876 1.87122 1.62882 1.36634 1.39881 1.22905 0.74091 0.78973 0.91130 1.90709 1.46591 1.52892 1.41631 1.22302 0.83953 1.00487 0.99010 0.92310 0.93230 0.91803 0.92486 0.91643 0.94803 0.91537 0.88604 0.88510 0.87357 0.89718 0.91821 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.70 55.43 0.76 -27.26 16 2 C 0.04 1.03 5.34 -17.82 -0.10 0.93 16 3 Si 1.04 25.64 26.42 -169.99 -4.49 21.15 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.27 -6.11 5.57 56.52 0.31 -5.80 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.60 -17.01 8.82 -34.44 -0.30 -17.32 16 8 H 0.05 1.65 7.99 -52.49 -0.42 1.23 16 9 C 0.03 0.68 1.84 -91.69 -0.17 0.51 16 10 H 0.03 0.79 6.79 -51.93 -0.35 0.44 16 11 C -0.13 -2.66 4.97 -26.61 -0.13 -2.79 16 12 C -0.12 -2.02 6.09 -26.65 -0.16 -2.18 16 13 C 0.06 0.93 5.00 -3.83 -0.02 0.92 16 14 N -0.52 -8.94 4.74 -226.77 -1.08 -10.02 16 15 C 0.03 0.35 3.24 -67.78 -0.22 0.14 16 16 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 17 C -0.20 -2.02 5.65 -25.12 -0.14 -2.16 16 18 C 0.06 0.56 7.90 37.98 0.30 0.86 16 19 O -0.35 -5.36 11.06 -39.09 -0.43 -5.79 16 20 C 0.49 8.36 6.12 36.31 0.22 8.59 16 21 O -0.44 -9.08 18.00 -18.39 -0.33 -9.42 16 22 C 0.07 1.45 4.05 -3.84 -0.02 1.43 16 23 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.43 4.85 -51.93 -0.25 1.18 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.47 6.79 -51.93 -0.35 0.12 16 29 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.10 1.15 5.53 -51.93 -0.29 0.87 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.48 6.61 -51.93 -0.34 1.13 16 35 H 0.03 0.61 6.63 -51.92 -0.34 0.27 16 LS Contribution 271.78 15.07 4.10 4.10 Total: -1.00 -33.04 271.78 -7.18 -40.22 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.97 Total: -1.90 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.74 Total: -11.08 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.32 Total: -37.28 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.76 Total: -15.21 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -4.49 Total: 21.15 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.04 -7.18 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397581684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.487 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds