Wall clock time and date at job start Thu Apr 9 2020 12:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47295 * 240.00016 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99940 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00061 * 341.77484 * 7 2 1 9 9 C 1.50702 * 119.99807 * 161.78346 * 7 2 1 10 10 H 1.08996 * 109.50400 * 54.51635 * 9 7 2 11 11 C 1.53119 * 109.50169 * 294.43486 * 9 7 2 12 12 C 1.53120 * 109.15793 * 182.40723 * 11 9 7 13 13 C 1.53038 * 109.28065 * 57.65412 * 12 11 9 14 14 N 1.46847 * 109.52390 * 300.82302 * 13 12 11 15 15 C 1.46896 * 111.00067 * 185.83855 * 14 13 12 16 16 H 1.09001 * 110.32887 * 64.65091 * 15 14 13 17 17 C 1.54493 * 110.36781 * 302.41169 * 15 14 13 18 18 C 1.54572 * 102.14495 * 225.81702 * 17 15 14 19 19 O 1.45833 * 104.44232 * 26.84749 * 18 17 15 20 20 C 1.34304 * 109.92379 * 329.32772 * 19 18 17 21 21 O 1.20829 * 125.22968 * 200.92985 * 20 19 18 22 22 C 1.46839 * 111.19919 * 61.73605 * 14 13 12 23 23 H 0.97000 * 119.99868 * 174.67299 * 1 2 3 24 24 H 1.09003 * 109.52370 * 302.31106 * 11 9 7 25 25 H 1.09000 * 109.52359 * 62.44107 * 11 9 7 26 26 H 1.09003 * 109.50102 * 177.59643 * 12 11 9 27 27 H 1.08995 * 109.50635 * 297.71077 * 12 11 9 28 28 H 1.09006 * 109.45743 * 60.83707 * 13 12 11 29 29 H 1.09002 * 109.45995 * 180.81249 * 13 12 11 30 30 H 1.08996 * 110.86966 * 343.98606 * 17 15 14 31 31 H 1.09004 * 110.86666 * 107.65581 * 17 15 14 32 32 H 1.09003 * 110.43868 * 145.59216 * 18 17 15 33 33 H 1.09000 * 110.43720 * 267.98240 * 18 17 15 34 34 H 1.09006 * 109.46328 * 178.24000 * 22 14 13 35 35 H 1.09009 * 109.46232 * 58.27605 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 1.5051 -2.1060 0.2916 9 6 3.4549 -1.2266 -0.4085 10 1 4.0187 -0.5151 0.1947 11 6 3.5781 -0.8529 -1.8883 12 6 5.0472 -0.9467 -2.3096 13 6 5.5605 -2.3632 -2.0408 14 7 5.4217 -2.6726 -0.6120 15 6 6.0309 -3.9705 -0.2928 16 1 7.1073 -3.9352 -0.4610 17 6 5.3901 -5.0892 -1.1441 18 6 5.1387 -6.1942 -0.0929 19 8 4.9918 -5.4723 1.1656 20 6 5.7342 -4.3534 1.1408 21 8 6.1091 -3.7439 2.1144 22 6 4.0143 -2.6349 -0.1949 23 1 -0.4850 -0.8364 -0.0780 24 1 2.9823 -1.5406 -2.4886 25 1 3.2197 0.1656 -2.0378 26 1 5.1358 -0.7232 -3.3728 27 1 5.6367 -0.2312 -1.7364 28 1 4.9795 -3.0769 -2.6251 29 1 6.6103 -2.4293 -2.3264 30 1 4.4521 -4.7524 -1.5854 31 1 6.0803 -5.4352 -1.9136 32 1 4.2254 -6.7414 -0.3268 33 1 5.9882 -6.8755 -0.0462 34 1 3.9411 -2.8986 0.8603 35 1 3.4406 -3.3474 -0.7877 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397581684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:58 Heat of formation + Delta-G solvation = -104.211830 kcal Electronic energy + Delta-G solvation = -18104.970677 eV Core-core repulsion = 15294.823271 eV Total energy + Delta-G solvation = -2810.147406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.35902 -39.66321 -38.60624 -35.96756 -34.28908 -31.97927 -31.75943 -28.38716 -26.65981 -24.95881 -23.67742 -22.58185 -21.72308 -20.30424 -19.71430 -18.24747 -18.09353 -17.60479 -16.37638 -15.88099 -15.79903 -15.43786 -15.19446 -14.99892 -14.63119 -14.35845 -13.95235 -13.90590 -13.37902 -13.12145 -12.94105 -12.66209 -12.48647 -12.20592 -11.80412 -11.77461 -11.58221 -11.35302 -11.26904 -11.05944 -10.73722 -10.45530 -9.33797 -8.76679 -6.38697 0.88924 1.42883 1.51444 1.71623 2.14598 2.47163 2.81207 2.90418 3.02177 3.42336 3.76427 3.88917 4.03566 4.09297 4.19682 4.32507 4.43343 4.57115 4.59402 4.64647 4.75610 4.79460 4.90324 4.93502 5.04888 5.22265 5.24219 5.48939 5.66699 5.73107 5.78462 6.01019 6.04900 6.18759 6.34782 6.54401 7.36676 8.60366 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029311 B = 0.008101 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.054039 B = 3455.691306 C = 3751.633648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.015 4.015 3 Si 1.079 2.921 4 H -0.288 1.288 5 H -0.232 1.232 6 H -0.277 1.277 7 C -0.605 4.605 8 H 0.013 0.987 9 C 0.023 3.977 10 H 0.018 0.982 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.533 5.533 15 C 0.028 3.972 16 H 0.155 0.845 17 C -0.182 4.182 18 C 0.050 3.950 19 O -0.376 6.376 20 C 0.483 3.517 21 O -0.493 6.493 22 C 0.087 3.913 23 H 0.252 0.748 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.027 0.973 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -10.848 -9.163 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.157 1.157 6 H -0.203 1.203 7 C -0.644 4.644 8 H 0.031 0.969 9 C 0.004 3.996 10 H 0.036 0.964 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.064 4.064 14 N -0.258 5.258 15 C -0.082 4.082 16 H 0.172 0.828 17 C -0.221 4.221 18 C -0.023 4.023 19 O -0.293 6.293 20 C 0.324 3.676 21 O -0.378 6.378 22 C -0.041 4.041 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.046 0.954 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.838 -8.676 -8.205 19.835 hybrid contribution -1.285 -2.399 0.178 2.728 sum 14.553 -11.075 -8.027 19.972 Atomic orbital electron populations 1.70964 1.08357 1.29509 1.48488 1.27135 0.95991 1.06108 0.92052 0.83668 0.74942 0.71926 0.79421 1.21437 1.15656 1.20320 1.22187 0.97305 0.94973 1.49886 0.96910 1.18948 0.93400 0.93095 0.94152 0.96431 1.21955 0.96507 1.00651 0.96739 1.21677 0.94915 0.97021 1.01810 1.22217 1.02610 0.96528 0.85003 1.62069 1.16122 1.27148 1.20490 1.23238 1.03968 0.90166 0.90793 0.82791 1.23711 1.03886 0.94917 0.99548 1.24505 1.06503 0.93902 0.77439 1.87077 1.62321 1.36679 1.43202 1.23593 0.73063 0.78797 0.92120 1.90659 1.49005 1.54434 1.43658 1.21826 0.86926 0.98308 0.97005 0.93893 0.93901 0.93202 0.89020 0.91889 0.93360 0.87263 0.90409 0.83717 0.85886 0.85849 0.95434 0.95412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.32 13.70 21.45 0.29 -60.03 16 2 C -0.01 -0.88 5.34 84.66 0.45 -0.43 16 3 Si 1.08 51.95 26.42 68.60 1.81 53.76 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.23 -9.67 5.57 99.48 0.55 -9.12 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.61 -35.86 8.82 25.60 0.23 -35.64 16 8 H 0.01 0.82 7.99 -2.91 -0.02 0.80 16 9 C 0.02 1.14 1.84 -11.49 -0.02 1.12 16 10 H 0.02 0.90 6.79 -2.39 -0.02 0.88 16 11 C -0.12 -4.91 4.97 30.67 0.15 -4.76 16 12 C -0.12 -3.42 6.09 30.65 0.19 -3.24 16 13 C 0.06 1.55 5.00 86.33 0.43 1.98 16 14 N -0.53 -17.09 4.74 -871.35 -4.13 -21.22 16 15 C 0.03 0.69 3.24 44.88 0.15 0.84 16 16 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 17 C -0.18 -2.96 5.65 31.64 0.18 -2.78 16 18 C 0.05 0.81 7.90 72.52 0.57 1.38 16 19 O -0.38 -11.37 11.06 -52.48 -0.58 -11.95 16 20 C 0.48 16.29 6.12 71.43 0.44 16.73 16 21 O -0.49 -21.07 18.00 21.61 0.39 -20.68 16 22 C 0.09 3.68 4.05 86.33 0.35 4.03 16 23 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 2.13 4.85 -2.39 -0.01 2.12 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.09 6.79 -2.38 -0.02 1.07 16 29 H 0.11 1.89 8.12 -2.39 -0.02 1.87 16 30 H 0.08 1.61 5.53 -2.39 -0.01 1.60 16 31 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 1.33 6.61 -2.38 -0.02 1.32 16 35 H 0.03 1.16 6.63 -2.38 -0.02 1.14 16 Total: -1.00 -78.69 271.78 1.79 -76.91 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.89 Total: 3.99 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 3.11 Total: -20.78 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.84 Total: -81.25 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.19 Total: -32.64 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 1.81 Total: 53.76 kcal Total: -78.69 1.79 -76.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397581684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.302 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds