Wall clock time and date at job start Thu Apr 9 2020 12:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99909 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99913 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 H 1.09005 * 109.55507 * 34.79571 * 12 11 9 14 14 C 1.53157 * 109.55516 * 274.48959 * 12 11 9 15 15 C 1.53046 * 109.41214 * 181.52031 * 14 12 11 16 16 O 1.43041 * 109.44204 * 59.32453 * 15 14 12 17 17 C 1.42582 * 113.85061 * 301.27733 * 16 15 14 18 18 C 1.53387 * 113.62599 * 188.22134 * 17 16 15 19 19 C 1.53843 * 86.98511 * 89.43062 * 18 17 16 20 20 C 1.53424 * 113.55810 * 286.14190 * 17 16 15 21 21 C 1.52812 * 112.93955 * 57.10240 * 17 16 15 22 22 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 24 24 H 1.08993 * 109.48368 * 301.50299 * 14 12 11 25 25 H 1.09010 * 109.48388 * 61.54060 * 14 12 11 26 26 H 1.09007 * 109.47478 * 299.33748 * 15 14 12 27 27 H 1.09001 * 109.48480 * 179.32220 * 15 14 12 28 28 H 1.09001 * 113.62844 * 203.95380 * 18 17 16 29 29 H 1.08998 * 113.63396 * 334.90812 * 18 17 16 30 30 H 1.09007 * 113.60932 * 270.59663 * 19 18 17 31 31 H 1.09003 * 113.68448 * 139.73511 * 19 18 17 32 32 H 1.08997 * 113.63348 * 25.03203 * 20 17 16 33 33 H 1.09007 * 113.63058 * 155.89766 * 20 17 16 34 34 H 1.08995 * 109.56713 * 186.22584 * 21 17 16 35 35 H 1.09002 * 109.65605 * 65.93919 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 1 0.3037 -4.8136 -0.5743 14 6 0.8618 -5.2967 1.4533 15 6 0.1302 -6.6409 1.4591 16 8 0.9706 -7.6429 0.8797 17 6 1.3693 -7.3574 -0.4591 18 6 2.1004 -8.5190 -1.1438 19 6 0.7181 -9.0073 -1.6102 20 6 0.2466 -7.5480 -1.4872 21 6 2.0940 -6.0186 -0.5920 22 1 -0.4850 0.8400 -0.0004 23 1 2.9189 -3.6477 0.0070 24 1 1.7747 -5.3772 2.0433 25 1 0.2172 -4.5301 1.8835 26 1 -0.7886 -6.5571 0.8786 27 1 -0.1121 -6.9185 2.4850 28 1 2.7512 -8.2052 -1.9600 29 1 2.5912 -9.1980 -0.4466 30 1 0.2334 -9.6834 -0.9058 31 1 0.7089 -9.3841 -2.6330 32 1 -0.7535 -7.4459 -1.0660 33 1 0.3841 -6.9647 -2.3977 34 1 2.2748 -5.8044 -1.6453 35 1 3.0443 -6.0616 -0.0599 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408317484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:15 Heat of formation + Delta-G solvation = -73.562116 kcal Electronic energy + Delta-G solvation = -17574.670443 eV Core-core repulsion = 14765.852109 eV Total energy + Delta-G solvation = -2808.818334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36434 -37.43266 -35.91653 -34.07850 -32.39164 -30.45714 -29.38472 -26.31821 -25.75385 -23.76177 -23.09842 -20.66398 -19.41497 -18.88056 -17.24177 -15.98763 -15.92242 -15.40113 -14.81990 -14.45303 -14.21316 -14.09382 -13.45571 -13.41018 -12.70845 -12.42903 -12.30129 -12.06425 -11.40133 -11.28295 -11.11408 -11.04723 -10.78348 -10.66714 -10.55659 -10.48647 -10.34730 -10.19982 -9.68732 -9.20452 -8.86600 -7.60540 -7.50345 -6.19023 -4.64587 3.12281 3.20607 3.25036 3.78424 4.09695 4.54761 4.58368 4.62552 4.79983 4.88279 5.05926 5.25051 5.39272 5.46677 5.62821 5.68452 5.69452 5.75388 5.84145 5.89325 5.91197 5.98544 6.09879 6.14922 6.25736 6.34570 6.42279 6.64997 6.80729 7.43037 7.46845 7.93473 8.11384 8.33685 9.02324 9.54348 10.59739 10.78572 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050127 B = 0.005412 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.449304 B = 5172.410856 C = 5291.309300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.158 3.842 13 H 0.076 0.924 14 C -0.164 4.164 15 C 0.064 3.936 16 O -0.362 6.362 17 C 0.099 3.901 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.165 4.165 21 C -0.139 4.139 22 H 0.267 0.733 23 H 0.379 0.621 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 -13.435 -1.286 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.051 3.949 13 H 0.094 0.906 14 C -0.203 4.203 15 C -0.012 4.012 16 O -0.281 6.281 17 C 0.059 3.941 18 C -0.162 4.162 19 C -0.172 4.172 20 C -0.203 4.203 21 C -0.177 4.177 22 H 0.078 0.922 23 H 0.211 0.789 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.616 -13.472 -1.194 13.776 hybrid contribution 0.816 1.155 -0.023 1.415 sum 3.433 -12.317 -1.217 12.844 Atomic orbital electron populations 1.70032 1.07049 1.27113 1.35533 1.25703 0.94603 1.00276 0.92602 0.86333 0.80505 0.81807 0.78206 1.18795 1.20169 1.20173 1.20935 0.93610 0.89462 1.54283 0.91451 1.18229 0.87240 0.82480 0.76175 1.90591 1.14051 1.86831 1.54886 1.46195 1.08410 1.04665 1.82315 1.20452 0.95830 0.84293 0.94284 0.90609 1.22600 1.01338 0.96977 0.99386 1.22586 0.92711 0.87883 0.98065 1.87826 1.68573 1.45446 1.26227 1.22137 0.95022 0.94113 0.82876 1.22944 0.96854 0.96904 0.99502 1.22784 0.96696 0.96626 1.01106 1.23498 0.99614 0.97076 1.00075 1.22317 0.99435 0.94073 1.01900 0.92200 0.78938 0.91747 0.90191 0.93069 0.89107 0.88952 0.90719 0.90049 0.91591 0.91004 0.89260 0.90636 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.83 55.55 0.66 -22.43 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.74 7.72 -12.99 -0.10 15.64 16 10 O -0.58 -18.65 14.68 5.20 0.08 -18.57 16 11 N -0.76 -17.07 5.08 -54.98 -0.28 -17.35 16 12 C 0.16 3.06 2.47 -67.69 -0.17 2.89 16 13 H 0.08 1.67 7.54 -51.93 -0.39 1.28 16 14 C -0.16 -2.96 5.67 -26.63 -0.15 -3.11 16 15 C 0.06 0.98 6.73 37.18 0.25 1.23 16 16 O -0.36 -5.52 10.45 -35.23 -0.37 -5.88 16 17 C 0.10 1.38 1.03 -90.30 -0.09 1.28 16 18 C -0.12 -1.41 7.47 -26.09 -0.19 -1.60 16 19 C -0.13 -1.46 8.02 -25.85 -0.21 -1.67 16 20 C -0.16 -2.13 7.11 -26.07 -0.19 -2.31 16 21 C -0.14 -2.12 4.74 -26.66 -0.13 -2.24 16 22 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 23 H 0.38 7.55 8.59 -40.82 -0.35 7.20 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.08 1.67 8.14 -51.92 -0.42 1.24 16 26 H 0.05 0.78 7.21 -51.92 -0.37 0.40 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.97 7.26 -51.93 -0.38 0.59 16 33 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 34 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -33.33 286.78 -7.28 -40.61 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.25 Total: 7.49 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.41 Total: -3.34 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.38 Total: -39.78 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.29 Total: -24.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.33 -7.28 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408317484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.948 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds