Wall clock time and date at job start Thu Apr 9 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47307 * 2 1 4 4 C 1.36004 * 117.00176 * 179.97438 * 3 2 1 5 5 C 1.38513 * 120.06900 * 0.02719 * 4 3 2 6 6 C 1.38453 * 119.99848 * 179.97438 * 5 4 3 7 7 F 1.35099 * 119.93558 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.12591 * 359.97438 * 6 5 4 9 9 C 1.38236 * 120.13816 * 359.74361 * 8 6 5 10 10 C 1.38690 * 120.00337 * 0.51332 * 9 8 6 11 11 N 1.40116 * 120.06864 * 179.76416 * 10 9 8 12 12 C 1.46496 * 119.99670 * 359.72410 * 11 10 9 13 13 C 1.50706 * 109.47106 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 H 1.09008 * 109.46961 * 59.99992 * 1 2 3 22 22 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47555 * 300.00188 * 1 2 3 24 24 H 1.09003 * 109.46883 * 240.00375 * 2 1 3 25 25 H 1.09000 * 109.47285 * 120.00070 * 2 1 3 26 26 H 1.08000 * 119.99654 * 359.94894 * 5 4 3 27 27 H 1.08004 * 119.92963 * 180.02562 * 8 6 5 28 28 H 1.08004 * 120.00341 * 180.27640 * 9 8 6 29 29 H 0.96998 * 120.00138 * 179.71867 * 11 10 9 30 30 H 1.09001 * 109.47001 * 59.99849 * 12 11 10 31 31 H 1.09000 * 109.47574 * 300.00066 * 12 11 10 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5255 0.0005 5 6 4.1998 0.4280 0.0005 6 6 5.5721 0.6111 0.0005 7 9 6.3952 -0.4602 0.0010 8 6 6.1025 1.8899 0.0000 9 6 5.2642 2.9890 -0.0058 10 6 3.8886 2.8120 -0.0004 11 7 3.0376 3.9252 -0.0014 12 6 3.6007 5.2776 -0.0019 13 6 2.4820 6.2875 -0.0035 14 1 1.4545 5.9550 -0.0036 15 6 2.7704 7.6357 -0.0047 16 7 4.0218 8.0405 -0.0050 17 14 1.3838 8.8874 -0.0060 18 1 0.0783 8.1799 -0.0060 19 1 1.4854 9.7399 1.2057 20 1 1.4856 9.7376 -1.2193 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 3.7881 -0.5705 0.0009 27 1 7.1736 2.0290 -0.0004 28 1 5.6803 3.9856 -0.0107 29 1 2.0757 3.8003 -0.0017 30 1 4.2150 5.4150 -0.8917 31 1 4.2144 5.4160 0.8882 32 1 4.2246 8.9890 -0.0056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572512247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:57 Heat of formation + Delta-G solvation = -67.963998 kcal Electronic energy + Delta-G solvation = -16457.242743 eV Core-core repulsion = 13525.206856 eV Total energy + Delta-G solvation = -2932.035887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -48.37038 -39.82752 -37.26434 -34.81147 -32.60835 -31.71867 -29.70680 -28.68119 -26.06524 -24.13623 -22.60769 -21.85663 -20.64850 -18.30859 -17.28362 -16.21937 -16.00636 -15.81222 -15.52311 -15.05158 -14.68125 -14.15961 -13.68092 -13.43871 -13.43619 -12.68913 -12.64944 -12.38844 -12.20540 -11.93045 -11.50790 -11.23379 -10.97281 -10.91008 -10.77082 -10.50963 -10.18460 -9.39408 -9.36869 -8.55197 -8.28713 -6.40990 -6.22370 -4.27069 1.65664 1.84783 3.21703 3.29309 3.33101 3.37407 4.11615 4.22597 4.48420 4.77932 4.92688 4.96232 5.14428 5.15267 5.23398 5.35799 5.43951 5.65749 5.77178 5.95533 6.01603 6.19326 6.43981 6.55604 6.73883 7.04576 7.18605 7.39339 7.51762 7.69175 7.92774 8.25369 8.64501 8.89178 9.39399 10.88367 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.006132 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.970394 B = 4565.042542 C = 5724.263602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.313 6.313 4 C 0.061 3.939 5 C -0.194 4.194 6 C 0.039 3.961 7 F -0.154 7.154 8 C -0.126 4.126 9 C -0.155 4.155 10 C 0.210 3.790 11 N -0.719 5.719 12 C 0.249 3.751 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.398 0.602 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 -14.057 0.007 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.228 6.228 4 C 0.012 3.988 5 C -0.214 4.214 6 C 0.017 3.983 7 F -0.133 7.133 8 C -0.146 4.146 9 C -0.179 4.179 10 C 0.100 3.900 11 N -0.343 5.343 12 C 0.128 3.872 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.160 0.840 29 H 0.233 0.767 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.905 -13.530 0.006 13.664 hybrid contribution -0.732 0.256 0.001 0.775 sum -2.637 -13.275 0.007 13.534 Atomic orbital electron populations 1.21761 0.93046 1.02416 1.03639 1.22667 0.95571 0.82563 1.00946 1.86026 1.18512 1.28429 1.89809 1.18086 0.82309 0.92017 1.06417 1.20711 0.92391 0.98360 1.09985 1.16966 0.86999 0.83174 1.11161 1.91402 1.72091 1.54832 1.94960 1.20745 1.00250 0.90444 1.03167 1.20431 0.90316 0.99494 1.07694 1.17529 0.90889 0.85302 0.96231 1.45482 1.07538 1.04091 1.77178 1.19165 0.95115 0.76231 0.96663 1.21227 0.92906 0.90880 1.52530 0.91861 1.24924 0.95975 0.98423 0.94655 1.69954 1.17478 1.15850 1.49468 0.86351 0.81842 0.80954 0.77750 1.19623 1.20769 1.20775 0.91508 0.90750 0.91503 0.92461 0.92461 0.85264 0.85363 0.84032 0.76748 0.96004 0.96002 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.68 5.46 37.16 0.20 0.89 16 3 O -0.31 -5.07 9.38 -19.75 -0.19 -5.25 16 4 C 0.06 1.06 6.70 -39.09 -0.26 0.79 16 5 C -0.19 -3.06 9.01 -39.40 -0.36 -3.42 16 6 C 0.04 0.64 7.30 -39.43 -0.29 0.35 16 7 F -0.15 -2.46 17.26 2.25 0.04 -2.42 16 8 C -0.13 -2.07 10.02 -39.51 -0.40 -2.46 16 9 C -0.16 -2.86 9.31 -39.42 -0.37 -3.23 16 10 C 0.21 4.11 6.67 -83.51 -0.56 3.56 16 11 N -0.72 -15.54 5.73 -59.64 -0.34 -15.88 16 12 C 0.25 6.25 4.67 -5.19 -0.02 6.23 16 13 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 14 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 25 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 27 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.14 2.68 6.74 -52.48 -0.35 2.33 16 29 H 0.40 8.39 7.68 -40.82 -0.31 8.08 16 30 H 0.02 0.59 7.94 -51.93 -0.41 0.17 16 31 H 0.02 0.59 7.96 -51.93 -0.41 0.17 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 281.03 15.07 4.24 4.24 Total: -1.00 -28.45 281.03 -6.46 -34.91 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.84 Total: 4.77 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.08 Total: -11.55 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.39 Total: -40.46 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.19 Total: -5.25 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.45 -6.46 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572512247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.052 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds