Wall clock time and date at job start Thu Apr 9 2020 12:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47307 * 2 1 4 4 C 1.36004 * 117.00176 * 179.97438 * 3 2 1 5 5 C 1.38513 * 120.06900 * 0.02719 * 4 3 2 6 6 C 1.38453 * 119.99848 * 179.97438 * 5 4 3 7 7 F 1.35099 * 119.93558 * 179.97438 * 6 5 4 8 8 C 1.38441 * 120.12591 * 359.97438 * 6 5 4 9 9 C 1.38236 * 120.13816 * 359.74361 * 8 6 5 10 10 C 1.38690 * 120.00337 * 0.51332 * 9 8 6 11 11 N 1.40116 * 120.06864 * 179.76416 * 10 9 8 12 12 C 1.46496 * 119.99670 * 359.72410 * 11 10 9 13 13 C 1.50706 * 109.47106 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 H 1.09008 * 109.46961 * 59.99992 * 1 2 3 22 22 H 1.08998 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47555 * 300.00188 * 1 2 3 24 24 H 1.09003 * 109.46883 * 240.00375 * 2 1 3 25 25 H 1.09000 * 109.47285 * 120.00070 * 2 1 3 26 26 H 1.08000 * 119.99654 * 359.94894 * 5 4 3 27 27 H 1.08004 * 119.92963 * 180.02562 * 8 6 5 28 28 H 1.08004 * 120.00341 * 180.27640 * 9 8 6 29 29 H 0.96998 * 120.00138 * 179.71867 * 11 10 9 30 30 H 1.09001 * 109.47001 * 59.99849 * 12 11 10 31 31 H 1.09000 * 109.47574 * 300.00066 * 12 11 10 32 32 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5255 0.0005 5 6 4.1998 0.4280 0.0005 6 6 5.5721 0.6111 0.0005 7 9 6.3952 -0.4602 0.0010 8 6 6.1025 1.8899 0.0000 9 6 5.2642 2.9890 -0.0058 10 6 3.8886 2.8120 -0.0004 11 7 3.0376 3.9252 -0.0014 12 6 3.6007 5.2776 -0.0019 13 6 2.4820 6.2875 -0.0035 14 1 1.4545 5.9550 -0.0036 15 6 2.7704 7.6357 -0.0047 16 7 4.0218 8.0405 -0.0050 17 14 1.3838 8.8874 -0.0060 18 1 0.0783 8.1799 -0.0060 19 1 1.4854 9.7399 1.2057 20 1 1.4856 9.7376 -1.2193 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 3.7881 -0.5705 0.0009 27 1 7.1736 2.0290 -0.0004 28 1 5.6803 3.9856 -0.0107 29 1 2.0757 3.8003 -0.0017 30 1 4.2150 5.4150 -0.8917 31 1 4.2144 5.4160 0.8882 32 1 4.2246 8.9890 -0.0056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572512247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:56 Heat of formation + Delta-G solvation = -84.932283 kcal Electronic energy + Delta-G solvation = -16457.978543 eV Core-core repulsion = 13525.206856 eV Total energy + Delta-G solvation = -2932.771687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.68951 -41.13839 -38.58299 -36.49911 -34.54088 -32.70487 -31.05427 -30.31175 -27.82918 -25.47498 -24.16939 -23.15334 -22.09147 -19.68421 -18.94668 -17.71699 -17.42544 -17.09240 -16.94883 -16.47941 -16.31561 -15.44694 -15.17348 -15.01049 -14.92660 -14.08656 -14.00006 -13.72533 -13.51828 -13.29483 -12.92937 -12.74521 -12.64182 -12.34874 -12.21178 -11.92838 -11.56475 -11.40711 -11.02830 -10.51430 -9.62260 -8.30270 -7.97000 -6.43197 0.29985 0.45405 1.41577 1.41882 1.55173 2.22923 2.35016 2.71998 2.83581 3.05269 3.44067 3.77636 4.06596 4.09826 4.16611 4.25608 4.40371 4.48668 4.75125 4.92013 4.97498 4.99158 5.08872 5.20058 5.28333 5.31514 5.33978 5.53562 5.82743 5.90073 6.28288 6.51397 6.76170 7.11317 7.29702 8.81628 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.006132 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.970394 B = 4565.042542 C = 5724.263602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.331 6.331 4 C 0.068 3.932 5 C -0.188 4.188 6 C 0.048 3.952 7 F -0.147 7.147 8 C -0.127 4.127 9 C -0.163 4.163 10 C 0.177 3.823 11 N -0.728 5.728 12 C 0.271 3.729 13 C -0.557 4.557 14 H 0.067 0.933 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.152 0.848 28 H 0.126 0.874 29 H 0.399 0.601 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -15.663 0.008 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.246 6.246 4 C 0.019 3.981 5 C -0.208 4.208 6 C 0.026 3.974 7 F -0.126 7.126 8 C -0.146 4.146 9 C -0.187 4.187 10 C 0.071 3.929 11 N -0.355 5.355 12 C 0.148 3.852 13 C -0.594 4.594 14 H 0.085 0.915 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.078 0.922 22 H 0.123 0.877 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.178 0.822 27 H 0.169 0.831 28 H 0.144 0.856 29 H 0.233 0.767 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.856 -15.199 0.007 15.465 hybrid contribution -0.378 0.567 0.000 0.682 sum -3.234 -14.631 0.007 14.984 Atomic orbital electron populations 1.21801 0.91543 1.04190 1.02986 1.23068 0.96842 0.80695 1.02264 1.86036 1.17633 1.31400 1.89541 1.18085 0.83362 0.91395 1.05220 1.20969 0.91929 0.99276 1.08653 1.17076 0.87407 0.83185 1.09727 1.91429 1.71956 1.54405 1.94781 1.20911 1.01229 0.89924 1.02561 1.20420 0.90481 0.99625 1.08212 1.17812 0.91148 0.85734 0.98219 1.45094 1.07593 1.03338 1.79442 1.18636 0.94177 0.78147 0.94227 1.21585 0.93458 0.91778 1.52628 0.91513 1.25867 0.98545 1.00495 0.93971 1.70072 1.19598 1.16513 1.50168 0.85237 0.78745 0.78111 0.77918 1.18724 1.20160 1.20170 0.92174 0.87717 0.92167 0.91039 0.91036 0.82167 0.83069 0.85624 0.76696 0.98549 0.98551 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 0.96 5.46 71.98 0.39 1.35 16 3 O -0.33 -10.32 9.38 -93.60 -0.88 -11.20 16 4 C 0.07 2.32 6.70 22.59 0.15 2.47 16 5 C -0.19 -5.46 9.01 22.39 0.20 -5.25 16 6 C 0.05 1.45 7.30 22.37 0.16 1.61 16 7 F -0.15 -4.23 17.26 44.97 0.78 -3.46 16 8 C -0.13 -4.02 10.02 22.32 0.22 -3.79 16 9 C -0.16 -6.16 9.31 22.38 0.21 -5.95 16 10 C 0.18 7.06 6.67 38.18 0.25 7.31 16 11 N -0.73 -32.65 5.73 -342.60 -1.96 -34.61 16 12 C 0.27 14.27 4.67 85.64 0.40 14.67 16 13 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 14 H 0.07 3.55 7.60 -2.91 -0.02 3.53 16 15 C 0.01 0.61 5.46 84.65 0.46 1.08 16 16 N -0.92 -53.84 13.29 21.45 0.28 -53.55 16 17 Si 0.98 42.77 29.54 68.60 2.03 44.80 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 25 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 26 H 0.16 3.60 6.30 -2.91 -0.02 3.58 16 27 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 28 H 0.13 5.07 6.74 -2.91 -0.02 5.05 16 29 H 0.40 17.33 7.68 -92.71 -0.71 16.62 16 30 H 0.00 -0.19 7.94 -2.39 -0.02 -0.20 16 31 H 0.00 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -61.43 281.03 4.10 -57.32 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.42 Total: 19.52 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 3.44 Total: -18.82 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.68 Total: -88.16 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.88 Total: -11.20 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.43 4.10 -57.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572512247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.611 kcal (2) G-P(sol) polarization free energy of solvation -61.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds