Wall clock time and date at job start Thu Apr 9 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47416 * 2 1 4 4 C 1.52999 * 109.46911 * 120.00717 * 2 1 3 5 5 C 1.50708 * 109.46900 * 185.00157 * 4 2 1 6 6 H 1.07997 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99562 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99234 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46852 * 90.00526 * 9 7 5 11 11 H 1.48499 * 109.47133 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00507 * 9 7 5 13 13 N 1.46906 * 109.46920 * 240.00303 * 2 1 3 14 14 C 1.46903 * 110.99954 * 306.04497 * 13 2 1 15 15 C 1.46898 * 110.99991 * 70.00502 * 13 2 1 16 16 C 1.50700 * 109.47089 * 170.00123 * 15 13 2 17 17 C 1.38423 * 122.53613 * 270.00030 * 16 15 13 18 18 C 1.33390 * 114.91977 * 180.02562 * 17 16 15 19 19 S 1.75887 * 109.59565 * 359.75483 * 18 17 16 20 20 C 1.33391 * 122.54338 * 90.02057 * 16 15 13 21 21 H 1.08997 * 109.47209 * 299.99944 * 1 2 3 22 22 H 1.08998 * 109.46788 * 59.99641 * 1 2 3 23 23 H 1.08995 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47022 * 304.99621 * 4 2 1 25 25 H 1.08996 * 109.47765 * 64.99593 * 4 2 1 26 26 H 0.97008 * 119.99475 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47016 * 183.95337 * 14 13 2 28 28 H 1.09001 * 109.47159 * 303.95452 * 14 13 2 29 29 H 1.08994 * 109.46850 * 63.95948 * 14 13 2 30 30 H 1.08994 * 109.47358 * 50.00027 * 15 13 2 31 31 H 1.09003 * 109.46628 * 289.99574 * 15 13 2 32 32 H 1.08001 * 122.54000 * 359.97438 * 17 16 15 33 33 H 1.07998 * 125.20164 * 180.02562 * 18 17 16 34 34 H 1.08002 * 125.19887 * 359.95301 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3583 8 7 5.5411 -1.1005 2.4134 9 14 3.3012 -2.1070 3.6964 10 1 3.1697 -3.5373 3.3190 11 1 4.0450 -1.9995 4.9772 12 1 1.9505 -1.5111 3.8567 13 7 2.0197 -0.6925 -1.1995 14 6 1.4343 -2.0354 -1.3079 15 6 1.7530 0.0974 -2.4091 16 6 2.4774 -0.5161 -3.5795 17 6 3.7671 -0.1548 -3.9292 18 6 4.2613 -0.7933 -4.9910 19 16 3.0654 -1.9262 -5.6074 20 6 1.9244 -1.4482 -4.3571 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -0.2619 2.1369 25 1 1.7516 -1.7716 1.2055 26 1 6.0254 -1.5067 3.1492 27 1 1.8664 -2.5520 -2.1650 28 1 1.6466 -2.5988 -0.3993 29 1 0.3556 -1.9520 -1.4401 30 1 2.1026 1.1189 -2.2603 31 1 0.6814 0.1054 -2.6087 32 1 4.3302 0.5884 -3.3843 33 1 5.2468 -0.6413 -5.4058 34 1 0.9298 -1.8510 -4.2349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591010563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:04 Heat of formation + Delta-G solvation = 39.630297 kcal Electronic energy + Delta-G solvation = -15152.250604 eV Core-core repulsion = 12791.093532 eV Total energy + Delta-G solvation = -2361.157072 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.83487 -36.85466 -32.81114 -31.23512 -29.15644 -27.86824 -27.28497 -24.44652 -22.91387 -21.73195 -18.79324 -18.51865 -17.31770 -16.55764 -15.67962 -15.25007 -14.40272 -13.91491 -13.67903 -13.05837 -12.80104 -12.71542 -12.48106 -12.27268 -12.03384 -11.81357 -11.55331 -11.47089 -11.01772 -10.90715 -10.70612 -10.51612 -10.04397 -9.73478 -9.52773 -9.02330 -8.59989 -8.40359 -8.20556 -7.49380 -5.89063 -3.82829 1.19913 1.84816 2.15074 2.94155 3.36569 3.44231 3.46265 4.55593 4.70169 5.06390 5.21009 5.44382 5.54472 5.58952 5.63383 5.75340 5.78049 5.86843 5.96508 6.00152 6.09837 6.25045 6.37471 6.51236 6.58129 6.61508 6.74009 6.80673 7.14642 7.33826 7.78751 7.83087 7.97778 8.74074 9.23758 9.73979 11.25045 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.006493 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.831889 B = 4310.989420 C = 4792.289794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.007 4.007 5 C -0.489 4.489 6 H 0.079 0.921 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.506 5.506 14 C 0.023 3.977 15 C 0.109 3.891 16 C -0.078 4.078 17 C -0.108 4.108 18 C -0.215 4.215 19 S 0.064 5.936 20 C -0.211 4.211 21 H 0.056 0.944 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.259 0.741 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.015 0.985 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 0.461 -13.583 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.012 4.012 3 H 0.094 0.906 4 C -0.044 4.044 5 C -0.528 4.528 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.228 5.228 14 C -0.125 4.125 15 C -0.021 4.021 16 C -0.090 4.090 17 C -0.138 4.138 18 C -0.350 4.350 19 S 0.327 5.673 20 C -0.347 4.347 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.857 -0.677 -14.633 16.623 hybrid contribution -1.150 0.392 1.891 2.248 sum -9.007 -0.285 -12.742 15.606 Atomic orbital electron populations 1.22569 0.99702 1.01428 1.00964 1.21732 0.89882 0.98522 0.91097 0.90604 1.19697 0.98033 0.95071 0.91630 1.21054 0.89386 1.33847 1.08483 0.90317 1.25012 0.94663 0.96337 0.97816 1.69917 1.06396 1.46247 1.32270 0.86910 0.80411 0.80628 0.82041 1.20616 1.21628 1.19318 1.62046 1.58410 1.01975 1.00409 1.22435 0.95457 0.91747 1.02856 1.20793 0.96040 0.97244 0.88050 1.18921 0.94899 0.97941 0.97287 1.20148 0.95190 1.01930 0.96562 1.25502 1.03539 1.02987 1.02924 1.84041 1.07640 1.42470 1.33172 1.25382 1.03830 1.04466 1.01068 0.92475 0.93812 0.92777 0.96393 0.96904 0.93107 0.92186 0.90625 0.96647 0.90178 0.94787 0.83908 0.82130 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 8.44 37.16 0.31 -2.66 16 2 C 0.10 1.86 2.26 -67.71 -0.15 1.71 16 3 H 0.08 1.51 7.93 -51.93 -0.41 1.09 16 4 C -0.01 -0.16 3.44 -27.88 -0.10 -0.26 16 5 C -0.49 -13.90 9.39 -34.44 -0.32 -14.22 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 9 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 N -0.51 -9.48 4.42 -236.33 -1.04 -10.52 16 14 C 0.02 0.40 8.33 60.07 0.50 0.90 16 15 C 0.11 1.69 4.80 -4.98 -0.02 1.66 16 16 C -0.08 -1.16 4.79 -106.25 -0.51 -1.67 16 17 C -0.11 -1.59 9.98 -41.21 -0.41 -2.01 16 18 C -0.21 -2.80 11.23 29.04 0.33 -2.48 16 19 S 0.06 0.79 23.34 -107.50 -2.51 -1.72 16 20 C -0.21 -2.83 9.36 29.04 0.27 -2.56 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.61 6.91 -51.93 -0.36 0.25 16 23 H 0.05 0.84 6.41 -51.93 -0.33 0.51 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 25 H 0.01 0.30 5.69 -51.93 -0.30 0.01 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.06 1.00 6.23 -51.93 -0.32 0.67 16 28 H 0.08 1.46 6.21 -51.93 -0.32 1.14 16 29 H 0.02 0.23 6.46 -51.93 -0.34 -0.10 16 30 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 31 H 0.03 0.48 7.04 -51.93 -0.37 0.11 16 32 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 284.03 15.07 4.28 4.28 Total: -1.00 -30.88 284.03 -8.18 -39.06 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.81 Total: -0.85 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.20 Total: -19.87 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.27 Total: -38.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.88 -8.18 -39.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.686 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds