Wall clock time and date at job start Thu Apr 9 2020 12:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47416 * 2 1 4 4 C 1.52999 * 109.46911 * 120.00717 * 2 1 3 5 5 C 1.50708 * 109.46900 * 185.00157 * 4 2 1 6 6 H 1.07997 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99562 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99234 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46852 * 90.00526 * 9 7 5 11 11 H 1.48499 * 109.47133 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00507 * 9 7 5 13 13 N 1.46906 * 109.46920 * 240.00303 * 2 1 3 14 14 C 1.46903 * 110.99954 * 306.04497 * 13 2 1 15 15 C 1.46898 * 110.99991 * 70.00502 * 13 2 1 16 16 C 1.50700 * 109.47089 * 170.00123 * 15 13 2 17 17 C 1.38423 * 122.53613 * 270.00030 * 16 15 13 18 18 C 1.33390 * 114.91977 * 180.02562 * 17 16 15 19 19 S 1.75887 * 109.59565 * 359.75483 * 18 17 16 20 20 C 1.33391 * 122.54338 * 90.02057 * 16 15 13 21 21 H 1.08997 * 109.47209 * 299.99944 * 1 2 3 22 22 H 1.08998 * 109.46788 * 59.99641 * 1 2 3 23 23 H 1.08995 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47022 * 304.99621 * 4 2 1 25 25 H 1.08996 * 109.47765 * 64.99593 * 4 2 1 26 26 H 0.97008 * 119.99475 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47016 * 183.95337 * 14 13 2 28 28 H 1.09001 * 109.47159 * 303.95452 * 14 13 2 29 29 H 1.08994 * 109.46850 * 63.95948 * 14 13 2 30 30 H 1.08994 * 109.47358 * 50.00027 * 15 13 2 31 31 H 1.09003 * 109.46628 * 289.99574 * 15 13 2 32 32 H 1.08001 * 122.54000 * 359.97438 * 17 16 15 33 33 H 1.07998 * 125.20164 * 180.02562 * 18 17 16 34 34 H 1.08002 * 125.19887 * 359.95301 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3583 8 7 5.5411 -1.1005 2.4134 9 14 3.3012 -2.1070 3.6964 10 1 3.1697 -3.5373 3.3190 11 1 4.0450 -1.9995 4.9772 12 1 1.9505 -1.5111 3.8567 13 7 2.0197 -0.6925 -1.1995 14 6 1.4343 -2.0354 -1.3079 15 6 1.7530 0.0974 -2.4091 16 6 2.4774 -0.5161 -3.5795 17 6 3.7671 -0.1548 -3.9292 18 6 4.2613 -0.7933 -4.9910 19 16 3.0654 -1.9262 -5.6074 20 6 1.9244 -1.4482 -4.3571 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6054 -0.2619 2.1369 25 1 1.7516 -1.7716 1.2055 26 1 6.0254 -1.5067 3.1492 27 1 1.8664 -2.5520 -2.1650 28 1 1.6466 -2.5988 -0.3993 29 1 0.3556 -1.9520 -1.4401 30 1 2.1026 1.1189 -2.2603 31 1 0.6814 0.1054 -2.6087 32 1 4.3302 0.5884 -3.3843 33 1 5.2468 -0.6413 -5.4058 34 1 0.9298 -1.8510 -4.2349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591010563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:04 Heat of formation + Delta-G solvation = 20.086283 kcal Electronic energy + Delta-G solvation = -15153.098096 eV Core-core repulsion = 12791.093532 eV Total energy + Delta-G solvation = -2362.004564 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09115 -38.14386 -34.86146 -32.85669 -30.42022 -29.53901 -28.55388 -25.80575 -24.52664 -23.17951 -20.35451 -19.61571 -18.76109 -18.36357 -17.09039 -16.51870 -16.20582 -15.38580 -15.04285 -14.66035 -14.17584 -13.95677 -13.90386 -13.79816 -13.41191 -13.24516 -12.92691 -12.80061 -12.62958 -12.32915 -12.15784 -11.87758 -11.67824 -11.54790 -11.32499 -11.09848 -10.65429 -9.65878 -9.23854 -8.82727 -8.15949 -6.14429 0.14373 0.83855 1.10484 1.37374 1.38865 1.49806 1.81170 2.42920 3.16572 3.40145 3.98180 4.13454 4.19398 4.37560 4.43975 4.49717 4.60544 4.61977 4.72173 4.73169 4.87855 4.96546 5.08783 5.16686 5.19126 5.24075 5.29819 5.51123 5.58054 5.66609 5.77493 6.38615 6.43839 6.56483 6.93888 7.45899 9.01664 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.028805 B = 0.006493 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.831889 B = 4310.989420 C = 4792.289794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 H 0.062 0.938 4 C -0.005 4.005 5 C -0.488 4.488 6 H 0.034 0.966 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.537 5.537 14 C 0.029 3.971 15 C 0.115 3.885 16 C -0.099 4.099 17 C -0.136 4.136 18 C -0.218 4.218 19 S 0.104 5.896 20 C -0.211 4.211 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.180 0.820 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 -0.475 -14.242 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 H 0.080 0.920 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.052 0.948 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.261 5.261 14 C -0.119 4.119 15 C -0.014 4.014 16 C -0.112 4.112 17 C -0.167 4.167 18 C -0.353 4.353 19 S 0.367 5.633 20 C -0.348 4.348 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.197 0.803 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.348 -1.605 -15.311 18.549 hybrid contribution -0.298 0.709 1.959 2.105 sum -10.646 -0.896 -13.352 17.100 Atomic orbital electron populations 1.22417 0.96272 1.02290 1.02488 1.21521 0.92520 0.97081 0.89883 0.92020 1.19647 0.94552 0.95913 0.94104 1.21310 0.92068 1.32350 1.06892 0.94762 1.25956 0.95496 0.97685 1.00794 1.70095 1.08472 1.48127 1.33523 0.85767 0.79808 0.79298 0.78362 1.19876 1.21539 1.16917 1.61909 1.59830 1.02972 1.01365 1.22352 0.97070 0.90769 1.01706 1.20736 0.97300 0.96449 0.86937 1.18924 0.95165 0.99259 0.97866 1.20223 0.95798 1.02919 0.97735 1.25819 1.04654 1.02577 1.02281 1.83907 1.06352 1.41130 1.31892 1.25652 1.04787 1.03535 1.00785 0.91749 0.91568 0.92133 0.96041 0.96452 0.93143 0.91803 0.93107 0.93958 0.90879 0.92664 0.85167 0.80282 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.04 8.44 71.98 0.61 -4.43 16 2 C 0.10 3.73 2.26 44.91 0.10 3.83 16 3 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 4 C 0.00 -0.22 3.44 29.85 0.10 -0.11 16 5 C -0.49 -28.41 9.39 25.60 0.24 -28.17 16 6 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 7 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 8 N -0.96 -62.11 13.96 21.45 0.30 -61.81 16 9 Si 0.94 45.39 27.47 68.60 1.88 47.27 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 13 N -0.54 -19.83 4.42 -901.60 -3.98 -23.81 16 14 C 0.03 0.96 8.33 127.69 1.06 2.02 16 15 C 0.12 3.46 4.80 85.56 0.41 3.87 16 16 C -0.10 -2.88 4.79 -20.92 -0.10 -2.98 16 17 C -0.14 -4.06 9.98 21.22 0.21 -3.85 16 18 C -0.22 -5.50 11.23 66.72 0.75 -4.75 16 19 S 0.10 2.33 23.34 -56.49 -1.32 1.01 16 20 C -0.21 -5.19 9.36 66.72 0.62 -4.56 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 1.61 6.91 -2.39 -0.02 1.59 16 23 H 0.06 1.66 6.41 -2.39 -0.02 1.65 16 24 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 25 H 0.02 0.80 5.69 -2.39 -0.01 0.78 16 26 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 27 H 0.06 2.02 6.23 -2.39 -0.01 2.01 16 28 H 0.05 1.90 6.21 -2.39 -0.01 1.89 16 29 H 0.04 1.15 6.46 -2.39 -0.02 1.13 16 30 H 0.07 2.23 7.92 -2.39 -0.02 2.21 16 31 H 0.06 1.40 7.04 -2.39 -0.02 1.39 16 32 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 33 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -67.75 284.03 2.38 -65.37 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.02 Total: 10.92 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.47 Total: -38.96 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.68 Total: -85.62 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.01 kcal Total: -67.75 2.38 -65.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.459 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds