Wall clock time and date at job start Thu Apr 9 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47620 * 2 1 4 4 C 1.53005 * 109.47268 * 239.99891 * 2 1 3 5 5 C 1.50695 * 109.47215 * 175.00232 * 4 2 1 6 6 H 1.08006 * 120.00005 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00171 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00122 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47267 * 119.99374 * 9 7 5 12 12 H 1.48503 * 109.46758 * 239.99783 * 9 7 5 13 13 N 1.46906 * 109.47178 * 119.99786 * 2 1 3 14 14 C 1.46910 * 110.99519 * 58.95480 * 13 2 1 15 15 C 1.46894 * 110.99926 * 295.00463 * 13 2 1 16 16 C 1.50707 * 109.46895 * 189.99872 * 15 13 2 17 17 C 1.38424 * 122.53886 * 270.18832 * 16 15 13 18 18 C 1.33384 * 114.91912 * 180.27018 * 17 16 15 19 19 S 1.75886 * 109.59693 * 359.77753 * 18 17 16 20 20 C 1.33386 * 122.53763 * 90.01963 * 16 15 13 21 21 H 1.08997 * 109.47057 * 299.99893 * 1 2 3 22 22 H 1.08996 * 109.47156 * 60.00098 * 1 2 3 23 23 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46849 * 294.99834 * 4 2 1 25 25 H 1.08998 * 109.47153 * 54.99862 * 4 2 1 26 26 H 0.96998 * 120.00367 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47196 * 296.04261 * 14 13 2 28 28 H 1.08996 * 109.47031 * 56.05098 * 14 13 2 29 29 H 1.09003 * 109.46159 * 176.04734 * 14 13 2 30 30 H 1.08996 * 109.47659 * 69.99886 * 15 13 2 31 31 H 1.08999 * 109.47170 * 309.99129 * 15 13 2 32 32 H 1.07997 * 122.53853 * 0.04890 * 17 16 15 33 33 H 1.08006 * 125.20125 * 179.79321 * 18 17 16 34 34 H 1.08002 * 125.20849 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8370 -3.3000 9 14 6.0922 -1.0616 -2.4365 10 1 6.5838 -0.2921 -1.2654 11 1 6.6855 -2.4227 -2.4194 12 1 6.4871 -0.3650 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 1.5282 -2.0762 1.2460 15 6 1.6486 0.0391 2.4180 16 6 2.3678 -0.5571 3.6006 17 6 1.8349 -1.5896 4.3530 18 6 2.5979 -1.9971 5.3683 19 16 4.0821 -1.0540 5.4064 20 6 3.5676 -0.1322 3.9995 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.7517 -1.7716 -1.2055 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2438 -4.0354 27 1 0.4419 -2.0731 1.3348 28 1 1.8167 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5722 -0.0345 2.5726 31 1 1.9297 1.0870 2.3125 32 1 0.8725 -2.0293 4.1366 33 1 2.3435 -2.7857 6.0610 34 1 4.1344 0.6600 3.5329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591010564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:05 Heat of formation + Delta-G solvation = 35.435245 kcal Electronic energy + Delta-G solvation = -15135.980722 eV Core-core repulsion = 12774.641739 eV Total energy + Delta-G solvation = -2361.338983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.81774 -36.77421 -32.83269 -30.97241 -29.42295 -27.46115 -26.57948 -24.79781 -23.08173 -21.78846 -18.71288 -18.54529 -17.35884 -16.15624 -15.58838 -15.17977 -14.39930 -14.01310 -13.62616 -13.14749 -12.77708 -12.63302 -12.31868 -12.20886 -11.85944 -11.63429 -11.44999 -11.23980 -10.88130 -10.69269 -10.60366 -10.52934 -10.36477 -9.92662 -9.17054 -8.95785 -8.60482 -8.26695 -8.21228 -7.42710 -5.87346 -3.84880 1.19875 1.83132 2.14336 2.87702 3.39416 3.46858 3.52608 4.58036 4.78121 5.07711 5.26370 5.47811 5.51070 5.60162 5.76230 5.78558 5.85782 5.97245 6.02349 6.08615 6.18474 6.24128 6.48829 6.59013 6.67739 6.70975 6.79381 6.99516 7.55771 7.70764 7.93386 8.04251 8.14715 8.59947 9.21580 9.76972 11.24726 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.007091 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.455906 B = 3947.711180 C = 4779.900660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.508 5.508 14 C 0.024 3.976 15 C 0.109 3.891 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.220 4.220 19 S 0.069 5.931 20 C -0.185 4.185 21 H 0.040 0.960 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.256 0.744 27 H 0.014 0.986 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 1.729 15.545 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.231 5.231 14 C -0.124 4.124 15 C -0.022 4.022 16 C -0.102 4.102 17 C -0.153 4.153 18 C -0.355 4.355 19 S 0.332 5.668 20 C -0.321 4.321 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.309 1.631 16.301 16.544 hybrid contribution -1.057 -0.117 -1.015 1.470 sum -3.366 1.515 15.286 15.725 Atomic orbital electron populations 1.22531 0.99828 1.01344 1.00678 1.21957 0.90023 0.98452 0.91806 0.91231 1.19246 0.96414 0.95466 0.89812 1.21220 0.91802 1.32822 1.06877 0.92072 1.25005 0.97998 0.95916 0.96009 1.69971 1.35105 1.37084 1.12398 0.86587 0.86506 0.77573 0.77635 1.19779 1.21339 1.21410 1.62154 1.58986 1.01756 1.00170 1.22435 0.96049 0.90794 1.03096 1.20778 0.95712 0.97646 0.88040 1.18908 0.95463 0.97667 0.98160 1.20111 1.01454 0.98096 0.95605 1.25453 0.98487 1.06628 1.04900 1.84124 1.21280 1.31802 1.29603 1.25443 0.99772 1.06222 1.00646 0.94137 0.92529 0.92863 0.96090 0.96317 0.93397 0.96787 0.89919 0.92545 0.94649 0.90570 0.84718 0.82315 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 8.50 37.16 0.32 -2.83 16 2 C 0.09 1.73 2.29 -67.71 -0.16 1.58 16 3 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.75 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.51 -9.69 4.46 -236.32 -1.05 -10.74 16 14 C 0.02 0.45 8.41 60.07 0.51 0.95 16 15 C 0.11 1.70 4.66 -4.98 -0.02 1.68 16 16 C -0.09 -1.33 4.75 -106.25 -0.51 -1.83 16 17 C -0.12 -1.61 8.38 -41.21 -0.35 -1.95 16 18 C -0.22 -2.64 11.23 29.04 0.33 -2.31 16 19 S 0.07 0.86 23.34 -107.50 -2.51 -1.65 16 20 C -0.18 -2.65 10.98 29.04 0.32 -2.33 16 21 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.91 6.47 -51.93 -0.34 0.57 16 24 H 0.02 0.56 6.09 -51.93 -0.32 0.25 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.01 0.23 6.51 -51.93 -0.34 -0.11 16 28 H 0.08 1.75 6.03 -51.93 -0.31 1.43 16 29 H 0.06 0.97 6.22 -51.93 -0.32 0.65 16 30 H 0.04 0.52 6.93 -51.93 -0.36 0.16 16 31 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -30.11 287.23 -8.43 -38.54 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.82 Total: -1.88 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.08 Total: -19.19 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.32 Total: -37.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.11 -8.43 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.971 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds