Wall clock time and date at job start Thu Apr 9 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47620 * 2 1 4 4 C 1.53005 * 109.47268 * 239.99891 * 2 1 3 5 5 C 1.50695 * 109.47215 * 175.00232 * 4 2 1 6 6 H 1.08006 * 120.00005 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00171 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00122 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47267 * 119.99374 * 9 7 5 12 12 H 1.48503 * 109.46758 * 239.99783 * 9 7 5 13 13 N 1.46906 * 109.47178 * 119.99786 * 2 1 3 14 14 C 1.46910 * 110.99519 * 58.95480 * 13 2 1 15 15 C 1.46894 * 110.99926 * 295.00463 * 13 2 1 16 16 C 1.50707 * 109.46895 * 189.99872 * 15 13 2 17 17 C 1.38424 * 122.53886 * 270.18832 * 16 15 13 18 18 C 1.33384 * 114.91912 * 180.27018 * 17 16 15 19 19 S 1.75886 * 109.59693 * 359.77753 * 18 17 16 20 20 C 1.33386 * 122.53763 * 90.01963 * 16 15 13 21 21 H 1.08997 * 109.47057 * 299.99893 * 1 2 3 22 22 H 1.08996 * 109.47156 * 60.00098 * 1 2 3 23 23 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46849 * 294.99834 * 4 2 1 25 25 H 1.08998 * 109.47153 * 54.99862 * 4 2 1 26 26 H 0.96998 * 120.00367 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47196 * 296.04261 * 14 13 2 28 28 H 1.08996 * 109.47031 * 56.05098 * 14 13 2 29 29 H 1.09003 * 109.46159 * 176.04734 * 14 13 2 30 30 H 1.08996 * 109.47659 * 69.99886 * 15 13 2 31 31 H 1.08999 * 109.47170 * 309.99129 * 15 13 2 32 32 H 1.07997 * 122.53853 * 0.04890 * 17 16 15 33 33 H 1.08006 * 125.20125 * 179.79321 * 18 17 16 34 34 H 1.08002 * 125.20849 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3582 8 7 3.5764 -1.8370 -3.3000 9 14 6.0922 -1.0616 -2.4365 10 1 6.5838 -0.2921 -1.2654 11 1 6.6855 -2.4227 -2.4194 12 1 6.4871 -0.3650 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 1.5282 -2.0762 1.2460 15 6 1.6486 0.0391 2.4180 16 6 2.3678 -0.5571 3.6006 17 6 1.8349 -1.5896 4.3530 18 6 2.5979 -1.9971 5.3683 19 16 4.0821 -1.0540 5.4064 20 6 3.5676 -0.1322 3.9995 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.7517 -1.7716 -1.2055 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2438 -4.0354 27 1 0.4419 -2.0731 1.3348 28 1 1.8167 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5722 -0.0345 2.5726 31 1 1.9297 1.0870 2.3125 32 1 0.8725 -2.0293 4.1366 33 1 2.3435 -2.7857 6.0610 34 1 4.1344 0.6600 3.5329 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591010564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:05 Heat of formation + Delta-G solvation = 17.367124 kcal Electronic energy + Delta-G solvation = -15136.764214 eV Core-core repulsion = 12774.641739 eV Total energy + Delta-G solvation = -2362.122476 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.08610 -38.09286 -34.90536 -32.53290 -30.63811 -29.26706 -27.93898 -26.17012 -24.92234 -23.08080 -20.33290 -19.59595 -18.38509 -18.33919 -17.06333 -16.59330 -16.18643 -15.39496 -14.99494 -14.64989 -14.05398 -13.90002 -13.75043 -13.67933 -13.35941 -13.08425 -12.88813 -12.83357 -12.61433 -12.37102 -12.19991 -12.10450 -11.80302 -11.56489 -11.07199 -11.01962 -10.47331 -9.62605 -9.26821 -8.84171 -8.09724 -6.13927 0.18704 0.84836 1.14485 1.40148 1.41501 1.54310 1.81582 2.47381 3.22192 3.41323 4.10052 4.11711 4.26084 4.37317 4.42460 4.52720 4.61963 4.66117 4.70302 4.82243 4.84519 5.01478 5.16745 5.20811 5.24120 5.30846 5.50840 5.56100 5.65998 5.73097 5.91769 6.34168 6.44929 6.55373 7.00467 7.51865 9.02516 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.007091 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.455906 B = 3947.711180 C = 4779.900660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.497 4.497 6 H 0.056 0.944 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.530 5.530 14 C 0.034 3.966 15 C 0.113 3.887 16 C -0.102 4.102 17 C -0.137 4.137 18 C -0.212 4.212 19 S 0.090 5.910 20 C -0.208 4.208 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.000 1.000 25 H -0.008 1.008 26 H 0.258 0.742 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.187 0.813 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 1.820 17.460 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.535 4.535 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.253 5.253 14 C -0.114 4.114 15 C -0.016 4.016 16 C -0.114 4.114 17 C -0.168 4.168 18 C -0.347 4.347 19 S 0.353 5.647 20 C -0.344 4.344 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.018 0.982 25 H 0.011 0.989 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.205 0.795 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.252 1.732 18.234 18.454 hybrid contribution -1.068 -0.154 -1.552 1.890 sum -3.320 1.579 16.682 17.082 Atomic orbital electron populations 1.22391 0.97103 1.01714 1.02123 1.21650 0.92160 0.97293 0.90351 0.91662 1.19110 0.95143 0.94608 0.91564 1.21526 0.93362 1.32157 1.06477 0.92528 1.25828 1.02701 0.95755 0.95808 1.70091 1.36930 1.38155 1.13102 0.85564 0.80933 0.77616 0.77917 1.19046 1.21037 1.20698 1.62020 1.60030 1.02254 1.00995 1.22284 0.97312 0.90269 1.01530 1.20763 0.96812 0.97321 0.86739 1.18970 0.95757 0.98517 0.98201 1.20233 1.02387 0.98145 0.96024 1.25845 0.97666 1.06511 1.04656 1.84055 1.21347 1.31145 1.28180 1.25612 1.00082 1.06882 1.01861 0.91289 0.92467 0.92988 0.98165 0.98937 0.93301 0.94781 0.93661 0.91448 0.93022 0.90404 0.83418 0.79534 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.69 8.50 71.98 0.61 -5.08 16 2 C 0.09 3.78 2.29 44.91 0.10 3.88 16 3 H 0.07 2.67 8.03 -2.39 -0.02 2.65 16 4 C 0.03 1.71 4.27 29.85 0.13 1.84 16 5 C -0.50 -28.45 8.84 25.60 0.23 -28.22 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 9 Si 0.95 46.08 29.54 68.60 2.03 48.11 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.53 -19.80 4.46 -901.58 -4.02 -23.82 16 14 C 0.03 1.22 8.41 127.69 1.07 2.30 16 15 C 0.11 3.34 4.66 85.56 0.40 3.74 16 16 C -0.10 -2.83 4.75 -20.92 -0.10 -2.93 16 17 C -0.14 -3.28 8.38 21.22 0.18 -3.10 16 18 C -0.21 -4.45 11.23 66.72 0.75 -3.70 16 19 S 0.09 2.04 23.34 -56.49 -1.32 0.72 16 20 C -0.21 -5.70 10.98 66.72 0.73 -4.96 16 21 H 0.07 1.86 6.75 -2.39 -0.02 1.85 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.70 6.47 -2.39 -0.02 1.68 16 24 H 0.00 0.01 6.09 -2.39 -0.01 -0.01 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.03 1.06 6.51 -2.39 -0.02 1.05 16 28 H 0.04 1.95 6.03 -2.39 -0.01 1.93 16 29 H 0.07 2.23 6.22 -2.39 -0.01 2.22 16 30 H 0.05 1.36 6.93 -2.39 -0.02 1.34 16 31 H 0.08 2.24 7.98 -2.39 -0.02 2.22 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -64.65 287.23 2.61 -62.04 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.07 Total: 6.90 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 4.56 Total: -36.08 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.73 Total: -81.69 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Total: -64.65 2.61 -62.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591010564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.409 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds