Wall clock time and date at job start Thu Apr 9 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08994 * 109.47475 * 34.99765 * 14 13 2 16 16 C 1.53002 * 109.46906 * 274.99579 * 14 13 2 17 17 C 1.50708 * 109.46951 * 155.00178 * 14 13 2 18 18 C 1.38418 * 122.53757 * 219.73733 * 17 14 13 19 19 C 1.33394 * 114.92153 * 179.75918 * 18 17 14 20 20 S 1.75886 * 109.58858 * 0.47417 * 19 18 17 21 21 C 1.33384 * 122.53730 * 40.02031 * 17 14 13 22 22 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 23 23 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 24 24 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 26 26 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 27 27 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 29 29 H 1.08995 * 109.47557 * 299.99938 * 16 14 13 30 30 H 1.08999 * 109.46813 * 60.00721 * 16 14 13 31 31 H 1.09004 * 109.46634 * 180.02562 * 16 14 13 32 32 H 1.08003 * 122.54015 * 359.97438 * 18 17 14 33 33 H 1.07994 * 125.20459 * 180.21034 * 19 18 17 34 34 H 1.08002 * 125.21081 * 359.97438 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 5.5420 -1.1100 -2.4075 9 14 3.3019 -2.1132 -3.6925 10 1 2.9466 -1.1695 -4.7827 11 1 4.1581 -3.1980 -4.2363 12 1 2.0626 -2.6997 -3.1220 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2577 0.9330 2.2907 16 6 3.4111 0.9808 2.3224 17 6 1.9785 -0.5677 3.6260 18 6 1.2474 -0.1275 4.7158 19 6 1.2552 -0.9490 5.7667 20 16 2.2393 -2.3609 5.4042 21 6 2.5887 -1.7416 3.7955 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2055 27 1 6.0266 -1.5200 -3.1409 28 1 1.4494 -1.4980 1.4101 29 1 4.2359 0.2704 2.3787 30 1 3.4862 1.5523 1.3973 31 1 3.4579 1.6595 3.1741 32 1 0.7085 0.8085 4.7140 33 1 0.7398 -0.7720 6.6991 34 1 3.2029 -2.2364 3.0578 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591036340.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:07 Heat of formation + Delta-G solvation = 25.425019 kcal Electronic energy + Delta-G solvation = -15004.072083 eV Core-core repulsion = 12642.299023 eV Total energy + Delta-G solvation = -2361.773059 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.81675 -36.32885 -32.94632 -31.73871 -28.78678 -28.25381 -27.40779 -24.46937 -22.77998 -21.04271 -19.61862 -18.42997 -17.44347 -16.55343 -15.75469 -14.64273 -14.26704 -13.96851 -13.63112 -12.96841 -12.83127 -12.69037 -12.28908 -12.25975 -12.17892 -11.75119 -11.61305 -11.48110 -11.13577 -10.95959 -10.60901 -10.47685 -10.14344 -9.67059 -9.54502 -8.99566 -8.68080 -8.38611 -8.28103 -7.61035 -5.87065 -3.80354 1.13181 1.76924 2.09332 2.81698 3.38337 3.46230 3.49445 4.58210 4.67055 5.05956 5.22093 5.46590 5.47688 5.53811 5.66043 5.79355 5.84186 5.84883 5.94527 6.06402 6.18625 6.35251 6.42449 6.51704 6.55393 6.64368 6.78729 6.90827 7.19470 7.37903 7.85449 7.95952 8.13311 8.76930 9.25230 9.76530 11.27004 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.005970 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.937523 B = 4689.226073 C = 4926.252317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.486 4.486 6 H 0.079 0.921 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.873 3.127 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.656 5.656 14 C 0.146 3.854 15 H 0.042 0.958 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.222 4.222 20 S 0.072 5.928 21 C -0.178 4.178 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 0.917 14.368 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.012 4.012 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.525 4.525 6 H 0.097 0.903 7 C -0.139 4.139 8 N -0.551 5.551 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.286 5.286 14 C 0.033 3.967 15 H 0.060 0.940 16 C -0.189 4.189 17 C -0.121 4.121 18 C -0.156 4.156 19 C -0.357 4.357 20 S 0.335 5.665 21 C -0.314 4.314 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.553 -0.374 14.914 17.197 hybrid contribution -1.762 0.786 -1.321 2.338 sum -10.315 0.412 13.593 17.068 Atomic orbital electron populations 1.22597 0.99543 1.01204 1.00843 1.21592 0.89608 0.98400 0.91576 0.91055 1.19599 0.97860 0.95364 0.91346 1.21063 0.89472 1.33413 1.08527 0.90337 1.25014 0.94662 0.96363 0.97899 1.69913 1.06372 1.46345 1.32424 0.86892 0.80219 0.80014 0.82709 1.20714 1.21731 1.19339 1.60633 1.57652 1.08290 1.02075 1.20145 0.97647 0.92700 0.86164 0.93998 1.21758 0.96742 0.99580 1.00833 1.19138 0.99622 0.95997 0.97344 1.20100 1.01616 1.01075 0.92799 1.25475 1.07613 0.99080 1.03526 1.84217 1.47695 1.23433 1.11184 1.25632 1.06518 1.00142 0.99098 0.94037 0.92508 0.93108 0.97074 0.96666 0.93166 0.84984 0.91669 0.91826 0.93698 0.84657 0.82318 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.15 37.16 0.34 -2.54 16 2 C 0.10 1.87 2.34 -67.71 -0.16 1.71 16 3 H 0.07 1.42 7.11 -51.93 -0.37 1.05 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 5 C -0.49 -13.70 9.39 -34.44 -0.32 -14.02 16 6 H 0.08 2.39 7.99 -52.49 -0.42 1.98 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 9 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 N -0.66 -11.83 5.43 -100.95 -0.55 -12.38 16 14 C 0.15 2.26 2.72 -68.86 -0.19 2.08 16 15 H 0.04 0.62 7.06 -51.93 -0.37 0.26 16 16 C -0.13 -2.15 9.38 37.16 0.35 -1.80 16 17 C -0.11 -1.53 4.61 -106.25 -0.49 -2.02 16 18 C -0.12 -1.51 9.95 -41.21 -0.41 -1.92 16 19 C -0.22 -2.45 11.23 29.04 0.33 -2.12 16 20 S 0.07 0.85 23.34 -107.50 -2.51 -1.66 16 21 C -0.18 -2.52 10.23 29.04 0.30 -2.22 16 22 H 0.04 0.58 7.43 -51.93 -0.39 0.20 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 26 H 0.02 0.37 7.19 -51.93 -0.37 -0.01 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.33 5.68 7.78 -39.29 -0.31 5.38 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.18 2.64 8.03 -52.49 -0.42 2.22 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -30.26 293.71 -8.11 -38.37 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.12 Total: 2.92 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -0.46 Total: -21.40 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.23 Total: -40.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.26 -8.11 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591036340.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.792 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds