Wall clock time and date at job start Thu Apr 9 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 14 14 C 1.46897 * 111.00060 * 84.99377 * 13 2 1 15 15 H 1.09000 * 109.47754 * 325.00582 * 14 13 2 16 16 C 1.53006 * 109.47001 * 85.00137 * 14 13 2 17 17 C 1.50696 * 109.47236 * 205.00025 * 14 13 2 18 18 C 1.38431 * 122.54143 * 139.74070 * 17 14 13 19 19 C 1.33391 * 114.92102 * 179.76350 * 18 17 14 20 20 S 1.75887 * 109.59141 * 0.47688 * 19 18 17 21 21 C 1.33389 * 122.54124 * 320.02667 * 17 14 13 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 24 24 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 25 25 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 26 26 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 27 27 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99951 * 208.95414 * 13 2 1 29 29 H 1.08994 * 109.47207 * 300.00302 * 16 14 13 30 30 H 1.09005 * 109.46630 * 60.00140 * 16 14 13 31 31 H 1.09000 * 109.47354 * 179.97438 * 16 14 13 32 32 H 1.07997 * 122.53598 * 359.97438 * 18 17 14 33 33 H 1.08000 * 125.20322 * 180.20611 * 19 18 17 34 34 H 1.08000 * 125.19969 * 359.97438 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.5836 -0.2898 1.2666 11 1 6.4861 -0.3640 3.6882 12 1 6.6863 -2.4211 2.4195 13 7 2.0197 -0.6924 -1.1996 14 6 2.0823 0.2228 -2.3469 15 1 1.2575 0.9331 -2.2907 16 6 3.4110 0.9812 -2.3224 17 6 1.9785 -0.5673 -3.6259 18 6 1.2386 -0.1322 -4.7120 19 6 1.2559 -0.9481 -5.7671 20 16 2.2390 -2.3608 -5.4042 21 6 2.5880 -1.7417 -3.7954 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.7517 -1.7716 1.2054 26 1 1.6054 -0.2618 2.1369 27 1 4.0609 -2.2439 4.0352 28 1 2.9173 -1.1204 -1.0289 29 1 3.4861 1.5526 -1.3973 30 1 4.2358 0.2708 -2.3787 31 1 3.4577 1.6599 -3.1740 32 1 0.6918 0.7991 -4.7067 33 1 0.7412 -0.7708 -6.6998 34 1 3.2022 -2.2364 -3.0576 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591036341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:09 Heat of formation + Delta-G solvation = 16.362044 kcal Electronic energy + Delta-G solvation = -15001.534391 eV Core-core repulsion = 12639.368332 eV Total energy + Delta-G solvation = -2362.166059 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.68437 -36.25232 -33.10038 -31.70540 -28.71742 -27.56245 -27.39616 -24.49803 -23.08729 -21.16636 -19.43940 -18.35363 -17.38065 -16.34099 -15.41578 -14.95525 -14.42617 -13.99320 -13.45517 -13.06186 -12.79187 -12.48732 -12.42727 -12.18325 -11.80807 -11.61451 -11.46468 -11.26567 -11.02042 -10.95516 -10.66317 -10.45532 -10.33683 -10.21234 -9.25705 -9.05354 -8.57628 -8.40978 -8.17679 -7.61719 -6.03526 -4.06462 1.23798 1.86101 2.18407 2.94986 3.27636 3.35966 3.38293 4.42099 4.79920 5.17847 5.31021 5.36577 5.49022 5.56914 5.67012 5.82654 5.98564 6.02248 6.06892 6.20241 6.28948 6.37240 6.45268 6.57207 6.63006 6.79771 6.95279 6.96378 7.54729 7.64224 7.96701 8.07140 8.27930 8.37339 9.00210 9.57819 11.07444 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.006217 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.382973 B = 4502.842167 C = 4948.634862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.675 5.675 14 C 0.140 3.860 15 H 0.078 0.922 16 C -0.174 4.174 17 C -0.085 4.085 18 C -0.123 4.123 19 C -0.222 4.222 20 S 0.064 5.936 21 C -0.182 4.182 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.354 0.646 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 2.842 -15.333 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.308 5.308 14 C 0.027 3.973 15 H 0.096 0.904 16 C -0.233 4.233 17 C -0.097 4.097 18 C -0.155 4.155 19 C -0.357 4.357 20 S 0.327 5.673 21 C -0.318 4.318 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.176 0.824 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.559 1.168 -16.133 16.562 hybrid contribution 1.418 1.796 1.147 2.560 sum -2.141 2.964 -14.986 15.426 Atomic orbital electron populations 1.21807 0.96798 1.01342 0.99377 1.21611 0.93233 0.96001 0.91262 0.95126 1.19283 0.95436 0.96206 0.90819 1.21220 0.92202 1.34351 1.08280 0.92839 1.24988 0.98140 0.95245 0.95743 1.69970 1.35366 1.35661 1.11960 0.86610 0.86102 0.77777 0.77941 1.19833 1.21075 1.20994 1.60659 1.34703 1.31446 1.04002 1.20143 0.96785 0.92170 0.88209 0.90362 1.22468 0.98143 1.00891 1.01797 1.18962 0.98346 0.95908 0.96443 1.20075 1.01456 1.01215 0.92714 1.25432 1.07754 0.99024 1.03468 1.84132 1.48348 1.23664 1.11135 1.25389 1.07580 0.99919 0.98872 0.92682 0.93375 0.94540 0.95629 0.96079 0.93023 0.82409 0.91821 0.92385 0.92956 0.84705 0.82408 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.40 37.16 0.35 -2.09 16 2 C 0.09 1.79 2.40 -67.71 -0.16 1.63 16 3 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.04 8.12 -34.44 -0.28 -14.32 16 6 H 0.05 1.39 7.49 -52.49 -0.39 1.00 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -12.66 5.61 -100.95 -0.57 -13.23 16 14 C 0.14 2.21 2.69 -68.87 -0.19 2.03 16 15 H 0.08 1.21 7.06 -51.93 -0.37 0.84 16 16 C -0.17 -2.65 9.13 37.16 0.34 -2.31 16 17 C -0.08 -1.24 4.86 -106.25 -0.52 -1.76 16 18 C -0.12 -1.58 9.95 -41.20 -0.41 -1.99 16 19 C -0.22 -2.59 11.23 29.04 0.33 -2.27 16 20 S 0.06 0.80 23.34 -107.50 -2.51 -1.71 16 21 C -0.18 -2.67 10.51 29.04 0.31 -2.36 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.58 7.43 -51.93 -0.39 0.20 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.35 7.20 6.70 -39.29 -0.26 6.94 16 29 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.16 2.45 7.80 -52.49 -0.41 2.04 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -28.49 295.70 -8.45 -36.95 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.09 Total: 4.36 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -0.46 Total: -21.47 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.17 Total: -38.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.49 -8.45 -36.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591036341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.309 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds