Wall clock time and date at job start Thu Apr 9 2020 12:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.50701 * 109.47212 * 184.99949 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 14 14 C 1.46897 * 111.00060 * 84.99377 * 13 2 1 15 15 H 1.09000 * 109.47754 * 325.00582 * 14 13 2 16 16 C 1.53006 * 109.47001 * 85.00137 * 14 13 2 17 17 C 1.50696 * 109.47236 * 205.00025 * 14 13 2 18 18 C 1.38431 * 122.54143 * 139.74070 * 17 14 13 19 19 C 1.33391 * 114.92102 * 179.76350 * 18 17 14 20 20 S 1.75887 * 109.59141 * 0.47688 * 19 18 17 21 21 C 1.33389 * 122.54124 * 320.02667 * 17 14 13 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 24 24 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 25 25 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 26 26 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 27 27 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99951 * 208.95414 * 13 2 1 29 29 H 1.08994 * 109.47207 * 300.00302 * 16 14 13 30 30 H 1.09005 * 109.46630 * 60.00140 * 16 14 13 31 31 H 1.09000 * 109.47354 * 179.97438 * 16 14 13 32 32 H 1.07997 * 122.53598 * 359.97438 * 18 17 14 33 33 H 1.08000 * 125.20322 * 180.20611 * 19 18 17 34 34 H 1.08000 * 125.19969 * 359.97438 * 21 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2998 9 14 6.0921 -1.0602 2.4371 10 1 6.5836 -0.2898 1.2666 11 1 6.4861 -0.3640 3.6882 12 1 6.6863 -2.4211 2.4195 13 7 2.0197 -0.6924 -1.1996 14 6 2.0823 0.2228 -2.3469 15 1 1.2575 0.9331 -2.2907 16 6 3.4110 0.9812 -2.3224 17 6 1.9785 -0.5673 -3.6259 18 6 1.2386 -0.1322 -4.7120 19 6 1.2559 -0.9481 -5.7671 20 16 2.2390 -2.3608 -5.4042 21 6 2.5880 -1.7417 -3.7954 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.7517 -1.7716 1.2054 26 1 1.6054 -0.2618 2.1369 27 1 4.0609 -2.2439 4.0352 28 1 2.9173 -1.1204 -1.0289 29 1 3.4861 1.5526 -1.3973 30 1 4.2358 0.2708 -2.3787 31 1 3.4577 1.6599 -3.1740 32 1 0.6918 0.7991 -4.7067 33 1 0.7412 -0.7708 -6.6998 34 1 3.2022 -2.2364 -3.0576 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591036341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:08 Heat of formation + Delta-G solvation = -0.028731 kcal Electronic energy + Delta-G solvation = -15002.245148 eV Core-core repulsion = 12639.368332 eV Total energy + Delta-G solvation = -2362.876817 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88551 -37.68994 -34.96701 -33.32863 -29.81388 -29.35104 -28.93340 -25.67488 -24.99368 -22.40718 -21.03314 -19.43459 -18.52462 -18.41712 -16.76824 -16.56136 -16.13031 -15.28207 -14.89845 -14.42460 -14.08615 -13.92060 -13.63302 -13.44459 -13.36522 -13.20645 -13.07083 -12.76657 -12.63771 -12.38782 -12.28910 -12.15639 -11.94430 -11.47028 -11.21535 -10.96982 -10.57541 -9.58256 -9.24974 -9.06321 -8.18437 -6.28128 0.23250 0.87717 1.18749 1.38341 1.39767 1.51047 1.90469 2.40181 3.13742 3.47823 4.03747 4.20171 4.30479 4.40641 4.46037 4.58250 4.62179 4.72281 4.77440 4.86192 4.98705 5.05132 5.21560 5.24596 5.26992 5.37201 5.47683 5.54561 5.61940 5.74536 5.86612 6.22863 6.48175 6.67415 6.87731 7.40559 8.93560 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.006217 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.382973 B = 4502.842167 C = 4948.634862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.098 3.902 3 H 0.030 0.970 4 C 0.027 3.973 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.678 5.678 14 C 0.142 3.858 15 H 0.087 0.913 16 C -0.168 4.168 17 C -0.091 4.091 18 C -0.138 4.138 19 C -0.209 4.209 20 S 0.083 5.917 21 C -0.211 4.211 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.061 0.939 25 H -0.005 1.005 26 H -0.006 1.006 27 H 0.262 0.738 28 H 0.342 0.658 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.190 0.810 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 3.820 -17.534 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.048 0.952 4 C -0.010 4.010 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.310 5.310 14 C 0.029 3.971 15 H 0.105 0.895 16 C -0.227 4.227 17 C -0.103 4.103 18 C -0.169 4.169 19 C -0.344 4.344 20 S 0.346 5.654 21 C -0.346 4.346 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.173 0.827 33 H 0.207 0.793 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.472 2.158 -18.358 18.808 hybrid contribution 1.349 1.468 1.775 2.669 sum -2.122 3.626 -16.583 17.107 Atomic orbital electron populations 1.21724 0.94763 1.01217 1.00875 1.21403 0.94808 0.95098 0.89883 0.95188 1.19141 0.94946 0.94628 0.92335 1.21559 0.93159 1.33715 1.08151 0.92138 1.25870 1.03098 0.94978 0.95465 1.70105 1.37374 1.36918 1.12790 0.85513 0.80156 0.77850 0.78207 1.18610 1.20772 1.20689 1.60684 1.33966 1.32203 1.04132 1.20188 0.97353 0.91981 0.87569 0.89478 1.22388 0.97509 1.00792 1.01985 1.18987 0.99014 0.95873 0.96455 1.20229 1.01872 1.02460 0.92302 1.25846 1.06502 0.97785 1.04249 1.84066 1.48211 1.23905 1.09219 1.25428 1.08335 1.00600 1.00265 0.93611 0.92901 0.91981 0.98705 0.98734 0.92944 0.83778 0.93304 0.93318 0.90643 0.82666 0.79304 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.40 71.98 0.68 -3.82 16 2 C 0.10 3.99 2.40 44.91 0.11 4.09 16 3 H 0.03 1.23 7.11 -2.39 -0.02 1.21 16 4 C 0.03 1.40 4.57 29.85 0.14 1.53 16 5 C -0.53 -28.85 8.12 25.60 0.21 -28.64 16 6 H 0.06 3.16 7.49 -2.91 -0.02 3.14 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.68 -25.41 5.61 -473.30 -2.66 -28.07 16 14 C 0.14 4.29 2.69 44.17 0.12 4.41 16 15 H 0.09 2.48 7.06 -2.39 -0.02 2.46 16 16 C -0.17 -4.90 9.13 71.98 0.66 -4.24 16 17 C -0.09 -2.52 4.86 -20.92 -0.10 -2.62 16 18 C -0.14 -3.12 9.95 21.22 0.21 -2.91 16 19 C -0.21 -4.17 11.23 66.72 0.75 -3.42 16 20 S 0.08 1.90 23.34 -56.49 -1.32 0.58 16 21 C -0.21 -6.02 10.51 66.72 0.70 -5.32 16 22 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.86 7.43 -2.39 -0.02 1.84 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.34 14.19 6.70 -89.69 -0.60 13.59 16 29 H 0.05 1.55 7.43 -2.39 -0.02 1.54 16 30 H 0.05 1.49 8.13 -2.38 -0.02 1.47 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.15 4.61 7.80 -2.91 -0.02 4.58 16 Total: -1.00 -61.47 295.70 2.74 -58.73 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.47 Total: 19.18 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.93 Total: -40.27 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.37 Total: -84.10 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -61.47 2.74 -58.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591036341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.702 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds