Wall clock time and date at job start Thu Apr 9 2020 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46883 * 299.99503 * 3 2 1 6 6 H 1.48503 * 109.47175 * 59.99781 * 3 2 1 7 7 C 1.37882 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00208 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.63913 * 298.30982 * 9 7 2 11 11 C 1.55159 * 110.72020 * 61.45209 * 9 7 2 12 12 C 1.54901 * 101.58315 * 154.04135 * 11 9 7 13 13 N 1.47420 * 104.83520 * 322.99070 * 12 11 9 14 14 C 1.34776 * 125.65437 * 204.09304 * 13 12 11 15 15 O 1.21281 * 120.00282 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99492 * 0.02562 * 14 13 12 17 17 C 1.53006 * 109.47124 * 180.02562 * 16 14 13 18 18 C 1.53000 * 117.49776 * 174.99774 * 17 16 14 19 19 C 1.52997 * 117.49537 * 243.62228 * 17 16 14 20 20 C 1.47029 * 108.70333 * 24.35196 * 13 12 11 21 21 H 0.96991 * 120.00491 * 0.02562 * 1 2 3 22 22 H 0.96693 * 113.99979 * 61.69093 * 10 9 7 23 23 H 1.09003 * 111.00287 * 35.96493 * 11 9 7 24 24 H 1.08997 * 111.03593 * 272.13445 * 11 9 7 25 25 H 1.09005 * 110.36918 * 204.14727 * 12 11 9 26 26 H 1.09001 * 110.46030 * 81.87657 * 12 11 9 27 27 H 1.08997 * 109.47456 * 60.00162 * 16 14 13 28 28 H 1.09003 * 109.47019 * 299.99582 * 16 14 13 29 29 H 1.09002 * 115.56020 * 29.30357 * 17 16 14 30 30 H 1.08990 * 117.49990 * 359.97438 * 18 17 16 31 31 H 1.09004 * 117.49237 * 214.97568 * 18 17 16 32 32 H 1.08999 * 117.49685 * 145.02116 * 19 17 16 33 33 H 1.08997 * 117.50044 * 359.97438 * 19 17 16 34 34 H 1.09001 * 109.87886 * 118.12865 * 20 13 12 35 35 H 1.08997 * 109.88639 * 239.30213 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1776 11 6 0.3764 -2.6282 -1.2746 12 6 0.2681 -4.1662 -1.4232 13 7 1.5877 -4.6790 -1.0122 14 6 2.1250 -5.8564 -1.3885 15 8 3.2233 -6.1778 -0.9867 16 6 1.3611 -6.7734 -2.3086 17 6 2.1884 -8.0323 -2.5762 18 6 1.5353 -9.1454 -3.3980 19 6 2.6415 -8.2872 -4.0151 20 6 2.2180 -3.6962 -0.1187 21 1 -0.4850 0.8399 -0.0004 22 1 -0.2286 -1.9340 1.2624 23 1 0.8756 -2.1864 -2.1370 24 1 -0.6055 -2.1802 -1.1224 25 1 0.0632 -4.4337 -2.4599 26 1 -0.5115 -4.5582 -0.7699 27 1 1.1635 -6.2612 -3.2502 28 1 0.4165 -7.0523 -1.8415 29 1 2.8656 -8.3291 -1.7752 30 1 0.5162 -8.9810 -3.7476 31 1 1.7829 -10.1746 -3.1376 32 1 3.6167 -8.7518 -4.1608 33 1 2.3499 -7.5583 -4.7712 34 1 2.3839 -4.1403 0.8628 35 1 3.1657 -3.3639 -0.5425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:16 Heat of formation + Delta-G solvation = -86.019821 kcal Electronic energy + Delta-G solvation = -17351.335494 eV Core-core repulsion = 14541.976953 eV Total energy + Delta-G solvation = -2809.358541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11150 -39.21006 -37.81063 -36.08789 -34.21915 -31.89446 -30.53852 -29.59002 -26.84782 -24.03646 -23.19060 -22.05884 -21.29135 -20.12267 -19.16676 -18.12209 -17.03649 -16.98242 -16.89429 -16.08718 -15.57851 -15.29870 -15.05343 -14.65802 -14.03421 -13.84586 -13.49637 -13.25341 -13.18292 -13.08665 -12.68296 -12.47726 -12.34640 -12.27545 -12.25712 -11.98112 -11.29139 -11.27426 -10.95974 -10.76791 -10.61709 -10.14806 -9.62356 -8.25807 -6.40122 1.39489 1.44035 1.53887 1.63959 2.03870 2.39421 2.94467 2.99755 3.55417 3.79533 3.86556 4.00358 4.05779 4.17526 4.28038 4.38416 4.52486 4.58149 4.66640 4.71527 4.77115 4.83008 4.92855 5.06742 5.17234 5.25832 5.30589 5.37460 5.46901 5.53429 5.75738 6.07717 6.59724 6.66713 7.16251 7.30286 7.39958 8.80435 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.005360 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.926595 B = 5222.299007 C = 5328.862247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.234 3.766 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.103 3.897 13 N -0.614 5.614 14 C 0.516 3.484 15 O -0.596 6.596 16 C -0.091 4.091 17 C -0.165 4.165 18 C -0.156 4.156 19 C -0.182 4.182 20 C 0.128 3.872 21 H 0.272 0.728 22 H 0.380 0.620 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.040 0.960 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -10.643 -8.253 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.603 4.603 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.402 6.402 11 C -0.164 4.164 12 C -0.018 4.018 13 N -0.347 5.347 14 C 0.307 3.693 15 O -0.477 6.477 16 C -0.131 4.131 17 C -0.184 4.184 18 C -0.193 4.193 19 C -0.218 4.218 20 C 0.004 3.996 21 H 0.082 0.918 22 H 0.230 0.770 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.558 -11.289 -7.975 14.056 hybrid contribution 0.403 1.701 0.370 1.787 sum -2.155 -9.587 -7.605 12.426 Atomic orbital electron populations 1.69742 1.06459 1.28378 1.49718 1.25552 0.95879 1.01808 0.92940 0.85511 0.78688 0.79441 0.77977 1.20268 1.19881 1.20328 1.21754 0.93339 0.91952 1.53285 0.93351 1.19613 0.87548 0.90291 0.83112 1.86124 1.51829 1.56311 1.45920 1.23074 1.01471 0.93059 0.98841 1.22557 0.83459 0.94635 1.01164 1.48780 1.20167 1.18258 1.47504 1.21191 0.86071 0.80613 0.81440 1.90620 1.23146 1.74963 1.59009 1.21213 0.98991 0.93305 0.99551 1.21970 1.03596 0.96874 0.95959 1.23093 0.98548 0.95718 1.01963 1.23134 0.99826 1.03902 0.94978 1.21757 0.96289 0.89113 0.92411 0.91830 0.77048 0.92469 0.90054 0.87822 0.90775 0.86655 0.86501 0.89330 0.86809 0.87892 0.88905 0.87834 0.94170 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.54 10.67 21.45 0.23 -45.31 16 2 C 0.04 2.03 5.28 84.66 0.45 2.48 16 3 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.57 -30.18 8.23 25.60 0.21 -29.97 16 8 H 0.05 2.66 7.58 -2.91 -0.02 2.64 16 9 C 0.23 11.42 0.84 -10.35 -0.01 11.41 16 10 O -0.59 -29.98 13.06 -148.98 -1.95 -31.92 16 11 C -0.13 -5.25 5.47 31.98 0.18 -5.07 16 12 C 0.10 3.42 6.68 86.85 0.58 4.00 16 13 N -0.61 -23.88 3.33 -811.77 -2.70 -26.58 16 14 C 0.52 18.91 7.85 87.66 0.69 19.60 16 15 O -0.60 -26.72 15.89 -3.03 -0.05 -26.76 16 16 C -0.09 -2.23 4.99 29.85 0.15 -2.08 16 17 C -0.17 -3.96 5.41 -10.79 -0.06 -4.02 16 18 C -0.16 -2.58 10.25 30.60 0.31 -2.27 16 19 C -0.18 -3.53 10.18 30.60 0.31 -3.22 16 20 C 0.13 5.98 6.23 86.73 0.54 6.52 16 21 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 22 H 0.38 19.04 7.46 -74.06 -0.55 18.49 16 23 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 24 H 0.08 3.50 7.53 -2.39 -0.02 3.48 16 25 H 0.10 2.57 7.48 -2.38 -0.02 2.55 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.12 2.28 7.58 -2.39 -0.02 2.26 16 28 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 2.64 7.31 -2.39 -0.02 2.62 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 34 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 35 H 0.05 2.70 7.67 -2.39 -0.02 2.68 16 Total: -1.00 -62.08 290.98 1.44 -60.64 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.53 Total: 29.25 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 3.35 Total: -2.63 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -2.47 Total: -71.90 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -1.99 Total: -58.69 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -62.08 1.44 -60.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds