Wall clock time and date at job start Thu Apr 9 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99492 * 2 1 4 4 H 1.48501 * 109.46876 * 264.89372 * 3 2 1 5 5 H 1.48501 * 109.47360 * 24.89472 * 3 2 1 6 6 H 1.48504 * 109.47068 * 144.89780 * 3 2 1 7 7 C 1.37873 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 185.80811 * 7 2 1 9 9 C 1.50696 * 120.00312 * 5.81187 * 7 2 1 10 10 O 1.42896 * 110.91698 * 59.66652 * 9 7 2 11 11 C 1.55159 * 111.00125 * 295.76617 * 9 7 2 12 12 C 1.54324 * 102.94032 * 206.42359 * 11 9 7 13 13 N 1.47024 * 107.27417 * 22.19554 * 12 11 9 14 14 C 1.34778 * 125.65315 * 181.04315 * 13 12 11 15 15 O 1.21277 * 120.00134 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99505 * 0.02562 * 14 13 12 17 17 C 1.52997 * 109.46758 * 180.02562 * 16 14 13 18 18 C 1.53009 * 117.49990 * 243.74672 * 17 16 14 19 19 C 1.53000 * 117.49833 * 175.08675 * 17 16 14 20 20 C 1.47431 * 108.70084 * 1.05681 * 13 12 11 21 21 H 0.96992 * 120.00715 * 0.02562 * 1 2 3 22 22 H 0.96699 * 113.99980 * 298.31038 * 10 9 7 23 23 H 1.09000 * 110.72057 * 88.06289 * 11 9 7 24 24 H 1.08999 * 110.72087 * 324.78776 * 11 9 7 25 25 H 1.09002 * 109.88493 * 262.77766 * 12 11 9 26 26 H 1.08998 * 109.88154 * 141.61184 * 12 11 9 27 27 H 1.08999 * 109.47400 * 299.99973 * 16 14 13 28 28 H 1.09002 * 109.47448 * 60.00301 * 16 14 13 29 29 H 1.08995 * 115.55427 * 29.41793 * 17 16 14 30 30 H 1.08999 * 117.49421 * 0.02562 * 18 17 16 31 31 H 1.08986 * 117.49935 * 145.01903 * 18 17 16 32 32 H 1.09001 * 117.50053 * 214.97647 * 19 17 16 33 33 H 1.09002 * 117.49834 * 359.97438 * 19 17 16 34 34 H 1.08995 * 110.36595 * 94.71243 * 20 13 12 35 35 H 1.08997 * 110.36407 * 217.03641 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6044 1.9842 -1.3945 5 1 1.3966 2.6815 0.5894 6 1 3.4886 1.4739 0.8051 7 6 2.0046 -1.1940 0.0005 8 1 3.0804 -1.1962 0.0952 9 6 1.2570 -2.4958 -0.1310 10 8 0.5226 -2.5409 -1.3560 11 6 0.3228 -2.7261 1.0862 12 6 0.2055 -4.2637 1.1458 13 7 1.3749 -4.8181 0.4482 14 6 1.6315 -6.1284 0.2642 15 8 2.6319 -6.4729 -0.3287 16 6 0.6754 -7.1652 0.7951 17 6 1.1977 -8.5624 0.4545 18 6 0.3494 -9.4248 -0.4823 19 6 0.4244 -9.7603 1.0093 20 6 2.2205 -3.7034 -0.0165 21 1 -0.4851 0.8399 -0.0004 22 1 -0.1536 -1.8541 -1.4347 23 1 -0.6529 -2.2713 0.9151 24 1 0.7756 -2.3382 1.9987 25 1 -0.7097 -4.5853 0.6486 26 1 0.2018 -4.5952 2.1842 27 1 0.5923 -7.0626 1.8771 28 1 -0.3048 -7.0225 0.3402 29 1 2.2812 -8.6539 0.3795 30 1 -0.5806 -8.9965 -0.8563 31 1 0.8748 -10.0838 -1.1734 32 1 0.9991 -10.6401 1.2989 33 1 -0.4562 -9.5530 1.6173 34 1 3.0058 -3.4946 0.7100 35 1 2.6542 -3.9362 -0.9889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:18 Heat of formation + Delta-G solvation = -67.201157 kcal Electronic energy + Delta-G solvation = -17367.524773 eV Core-core repulsion = 14558.982270 eV Total energy + Delta-G solvation = -2808.542503 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55868 -37.68018 -36.59340 -34.28291 -32.23456 -30.37834 -29.04704 -27.98295 -25.00416 -22.45648 -22.35604 -20.72967 -19.67627 -18.68231 -17.22364 -16.71680 -15.70871 -15.22309 -14.97607 -14.69563 -14.10791 -13.99493 -13.54752 -13.09961 -12.59347 -12.17143 -11.93733 -11.68585 -11.52575 -11.39352 -11.34387 -11.24943 -10.89935 -10.62464 -10.48947 -10.35011 -10.05070 -9.96526 -9.43008 -9.27014 -8.72408 -8.22946 -7.97156 -6.30205 -4.37849 3.12064 3.20225 3.27008 3.29810 3.53901 3.85490 4.25991 4.72403 4.81330 4.93273 4.96967 5.18349 5.51071 5.56183 5.57624 5.60937 5.68563 5.76902 5.86432 5.89566 6.01844 6.08212 6.30335 6.35780 6.44061 6.66513 6.89373 6.98001 7.27993 7.33751 7.71801 8.00265 8.17338 8.63585 8.69505 9.29432 9.35547 10.76926 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.059303 B = 0.005264 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.035687 B = 5318.300404 C = 5462.153118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.098 3.902 13 N -0.609 5.609 14 C 0.524 3.476 15 O -0.555 6.555 16 C -0.105 4.105 17 C -0.136 4.136 18 C -0.179 4.179 19 C -0.183 4.183 20 C 0.120 3.880 21 H 0.268 0.732 22 H 0.380 0.620 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 -10.690 3.921 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.390 6.390 11 C -0.175 4.175 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.313 3.687 15 O -0.435 6.435 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.216 4.216 19 C -0.220 4.220 20 C -0.002 4.002 21 H 0.078 0.922 22 H 0.229 0.771 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.245 -11.337 3.499 12.075 hybrid contribution -0.110 1.480 0.208 1.498 sum -2.354 -9.858 3.708 10.792 Atomic orbital electron populations 1.69741 1.05963 1.27654 1.50025 1.24978 0.95001 0.99513 0.93405 0.86445 0.79752 0.82314 0.78544 1.20289 1.21126 1.19760 1.21442 0.94194 0.90392 1.51456 0.91706 1.19608 0.87439 0.90905 0.81364 1.86150 1.54535 1.57933 1.40401 1.23193 1.03116 0.89685 1.01458 1.22198 0.87883 0.97485 0.94921 1.48644 1.24912 1.05109 1.55470 1.20102 0.86709 0.82028 0.79906 1.90636 1.29237 1.80395 1.43199 1.21175 0.98949 0.92129 1.02258 1.22069 0.99421 0.89908 1.04053 1.23026 1.01991 1.03764 0.92828 1.22996 1.02841 0.99439 0.96740 1.22357 0.93546 0.85104 0.99203 0.92230 0.77101 0.89509 0.91329 0.92465 0.92866 0.88924 0.89126 0.86482 0.88873 0.88896 0.88885 0.88884 0.91120 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.76 10.79 55.43 0.60 -22.16 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.92 8.25 -34.44 -0.28 -14.20 16 8 H 0.06 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 5.94 0.87 -89.62 -0.08 5.86 16 10 O -0.58 -14.75 13.16 -35.23 -0.46 -15.21 16 11 C -0.14 -2.88 5.41 -24.90 -0.13 -3.01 16 12 C 0.10 1.75 6.49 -3.06 -0.02 1.73 16 13 N -0.61 -12.13 3.33 -170.52 -0.57 -12.69 16 14 C 0.52 9.97 7.85 -10.98 -0.09 9.88 16 15 O -0.56 -12.36 15.82 5.56 0.09 -12.27 16 16 C -0.11 -1.47 5.17 -27.88 -0.14 -1.61 16 17 C -0.14 -1.79 5.41 -90.62 -0.49 -2.28 16 18 C -0.18 -2.04 10.18 -26.69 -0.27 -2.31 16 19 C -0.18 -1.87 10.25 -26.69 -0.27 -2.14 16 20 C 0.12 2.70 6.08 -2.52 -0.02 2.69 16 21 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 22 H 0.38 9.52 7.55 45.56 0.34 9.86 16 23 H 0.09 1.92 7.56 -51.93 -0.39 1.53 16 24 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 29 H 0.12 1.75 7.31 -51.93 -0.38 1.37 16 30 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 31 H 0.09 1.00 8.14 -51.94 -0.42 0.58 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 35 H 0.07 1.69 8.04 -51.93 -0.42 1.27 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -28.35 292.57 -7.44 -35.79 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.59 Total: 10.72 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.89 Total: -3.63 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.03 Total: -34.85 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.38 Total: -27.48 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.35 -7.44 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.412 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds