Wall clock time and date at job start Thu Apr 9 2020 12:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99492 * 2 1 4 4 H 1.48501 * 109.46876 * 264.89372 * 3 2 1 5 5 H 1.48501 * 109.47360 * 24.89472 * 3 2 1 6 6 H 1.48504 * 109.47068 * 144.89780 * 3 2 1 7 7 C 1.37873 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99477 * 185.80811 * 7 2 1 9 9 C 1.50696 * 120.00312 * 5.81187 * 7 2 1 10 10 O 1.42896 * 110.91698 * 59.66652 * 9 7 2 11 11 C 1.55159 * 111.00125 * 295.76617 * 9 7 2 12 12 C 1.54324 * 102.94032 * 206.42359 * 11 9 7 13 13 N 1.47024 * 107.27417 * 22.19554 * 12 11 9 14 14 C 1.34778 * 125.65315 * 181.04315 * 13 12 11 15 15 O 1.21277 * 120.00134 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99505 * 0.02562 * 14 13 12 17 17 C 1.52997 * 109.46758 * 180.02562 * 16 14 13 18 18 C 1.53009 * 117.49990 * 243.74672 * 17 16 14 19 19 C 1.53000 * 117.49833 * 175.08675 * 17 16 14 20 20 C 1.47431 * 108.70084 * 1.05681 * 13 12 11 21 21 H 0.96992 * 120.00715 * 0.02562 * 1 2 3 22 22 H 0.96699 * 113.99980 * 298.31038 * 10 9 7 23 23 H 1.09000 * 110.72057 * 88.06289 * 11 9 7 24 24 H 1.08999 * 110.72087 * 324.78776 * 11 9 7 25 25 H 1.09002 * 109.88493 * 262.77766 * 12 11 9 26 26 H 1.08998 * 109.88154 * 141.61184 * 12 11 9 27 27 H 1.08999 * 109.47400 * 299.99973 * 16 14 13 28 28 H 1.09002 * 109.47448 * 60.00301 * 16 14 13 29 29 H 1.08995 * 115.55427 * 29.41793 * 17 16 14 30 30 H 1.08999 * 117.49421 * 0.02562 * 18 17 16 31 31 H 1.08986 * 117.49935 * 145.01903 * 18 17 16 32 32 H 1.09001 * 117.50053 * 214.97647 * 19 17 16 33 33 H 1.09002 * 117.49834 * 359.97438 * 19 17 16 34 34 H 1.08995 * 110.36595 * 94.71243 * 20 13 12 35 35 H 1.08997 * 110.36407 * 217.03641 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6044 1.9842 -1.3945 5 1 1.3966 2.6815 0.5894 6 1 3.4886 1.4739 0.8051 7 6 2.0046 -1.1940 0.0005 8 1 3.0804 -1.1962 0.0952 9 6 1.2570 -2.4958 -0.1310 10 8 0.5226 -2.5409 -1.3560 11 6 0.3228 -2.7261 1.0862 12 6 0.2055 -4.2637 1.1458 13 7 1.3749 -4.8181 0.4482 14 6 1.6315 -6.1284 0.2642 15 8 2.6319 -6.4729 -0.3287 16 6 0.6754 -7.1652 0.7951 17 6 1.1977 -8.5624 0.4545 18 6 0.3494 -9.4248 -0.4823 19 6 0.4244 -9.7603 1.0093 20 6 2.2205 -3.7034 -0.0165 21 1 -0.4851 0.8399 -0.0004 22 1 -0.1536 -1.8541 -1.4347 23 1 -0.6529 -2.2713 0.9151 24 1 0.7756 -2.3382 1.9987 25 1 -0.7097 -4.5853 0.6486 26 1 0.2018 -4.5952 2.1842 27 1 0.5923 -7.0626 1.8771 28 1 -0.3048 -7.0225 0.3402 29 1 2.2812 -8.6539 0.3795 30 1 -0.5806 -8.9965 -0.8563 31 1 0.8748 -10.0838 -1.1734 32 1 0.9991 -10.6401 1.2989 33 1 -0.4562 -9.5530 1.6173 34 1 3.0058 -3.4946 0.7100 35 1 2.6542 -3.9362 -0.9889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:17 Heat of formation + Delta-G solvation = -85.972608 kcal Electronic energy + Delta-G solvation = -17368.338764 eV Core-core repulsion = 14558.982270 eV Total energy + Delta-G solvation = -2809.356494 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08787 -39.18229 -37.79744 -36.07143 -34.21600 -31.94371 -30.51145 -29.58563 -26.83572 -23.99820 -23.19944 -21.98444 -21.34408 -20.12225 -19.12098 -18.18945 -17.09477 -16.89308 -16.64711 -16.24590 -15.71098 -15.15448 -14.93670 -14.71877 -14.15504 -13.80616 -13.56550 -13.30717 -13.16104 -12.98422 -12.67930 -12.46430 -12.37212 -12.29310 -12.24860 -11.85500 -11.30147 -11.24916 -10.97151 -10.76670 -10.63805 -10.14377 -9.56580 -8.24426 -6.38765 1.42148 1.45570 1.52977 1.65808 2.07377 2.40425 2.93972 3.00194 3.56806 3.79605 3.81793 4.02209 4.06845 4.17737 4.34475 4.38146 4.50948 4.59963 4.67285 4.70898 4.79787 4.82395 4.90925 5.06272 5.18010 5.28428 5.30685 5.38004 5.45113 5.56221 5.77403 6.08223 6.62592 6.67726 7.18377 7.31671 7.37343 8.81139 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.059303 B = 0.005264 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.035687 B = 5318.300404 C = 5462.153118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.234 3.766 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.105 3.895 13 N -0.613 5.613 14 C 0.516 3.484 15 O -0.597 6.597 16 C -0.092 4.092 17 C -0.164 4.164 18 C -0.185 4.185 19 C -0.154 4.154 20 C 0.123 3.877 21 H 0.271 0.729 22 H 0.377 0.623 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -11.561 5.249 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.604 4.604 8 H 0.071 0.929 9 C 0.194 3.806 10 O -0.401 6.401 11 C -0.165 4.165 12 C -0.017 4.017 13 N -0.346 5.346 14 C 0.307 3.693 15 O -0.479 6.479 16 C -0.131 4.131 17 C -0.183 4.183 18 C -0.222 4.222 19 C -0.191 4.191 20 C 0.000 4.000 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.685 -12.220 4.844 13.652 hybrid contribution 0.362 1.746 -0.248 1.801 sum -3.322 -10.474 4.596 11.911 Atomic orbital electron populations 1.69794 1.06547 1.28386 1.49546 1.25565 0.95832 1.01866 0.92950 0.85584 0.78750 0.79145 0.78186 1.20587 1.20210 1.19729 1.21668 0.94002 0.91983 1.52712 0.92866 1.19766 0.88223 0.90721 0.81924 1.86137 1.54602 1.57796 1.41567 1.22969 1.01529 0.92451 0.99562 1.22253 0.87581 0.94730 0.97145 1.48754 1.25077 1.05016 1.55722 1.21139 0.86977 0.82221 0.78987 1.90615 1.31329 1.80930 1.45001 1.21199 0.97846 0.90349 1.03679 1.21974 0.98412 0.90738 1.07158 1.23140 1.01774 1.03341 0.93920 1.23103 1.02461 0.97757 0.95783 1.22112 0.93824 0.86083 0.97944 0.91930 0.77365 0.90504 0.91950 0.90641 0.89011 0.86191 0.87291 0.89168 0.88128 0.88890 0.87732 0.86832 0.91199 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.67 10.79 21.45 0.23 -45.44 16 2 C 0.04 2.01 5.28 84.65 0.45 2.46 16 3 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.57 -29.80 8.25 25.60 0.21 -29.59 16 8 H 0.05 2.84 7.79 -2.91 -0.02 2.82 16 9 C 0.23 11.35 0.87 -10.15 -0.01 11.34 16 10 O -0.59 -30.47 13.16 -148.98 -1.96 -32.43 16 11 C -0.13 -5.25 5.41 31.78 0.17 -5.08 16 12 C 0.10 3.46 6.49 86.73 0.56 4.03 16 13 N -0.61 -23.88 3.33 -811.78 -2.70 -26.58 16 14 C 0.52 19.18 7.85 87.66 0.69 19.86 16 15 O -0.60 -27.06 15.82 -3.02 -0.05 -27.11 16 16 C -0.09 -2.30 5.17 29.85 0.15 -2.14 16 17 C -0.16 -4.02 5.41 -10.79 -0.06 -4.08 16 18 C -0.18 -3.79 10.18 30.62 0.31 -3.48 16 19 C -0.15 -2.61 10.25 30.62 0.31 -2.29 16 20 C 0.12 5.69 6.08 86.85 0.53 6.22 16 21 H 0.27 13.05 8.31 -92.71 -0.77 12.27 16 22 H 0.38 19.19 7.55 -74.06 -0.56 18.63 16 23 H 0.08 3.33 7.56 -2.39 -0.02 3.31 16 24 H 0.06 2.63 8.03 -2.39 -0.02 2.61 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.11 2.38 7.88 -2.39 -0.02 2.36 16 29 H 0.09 2.71 7.31 -2.39 -0.02 2.69 16 30 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 3.17 8.03 -2.39 -0.02 3.15 16 35 H 0.04 2.14 8.04 -2.39 -0.02 2.12 16 Total: -1.00 -61.95 292.57 1.39 -60.56 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.52 Total: 30.68 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 3.32 Total: -2.75 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -2.47 Total: -72.02 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -2.01 Total: -59.53 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.95 1.39 -60.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.411 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds