Wall clock time and date at job start Thu Apr 9 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47070 * 2 1 4 4 C 1.36905 * 120.00053 * 264.06052 * 3 2 1 5 5 H 1.08005 * 119.99718 * 137.88664 * 4 3 2 6 6 C 1.39015 * 120.00427 * 317.88047 * 4 3 2 7 7 N 1.31385 * 119.99668 * 345.72236 * 6 4 3 8 8 Si 1.86797 * 120.00116 * 165.71528 * 6 4 3 9 9 H 1.48493 * 109.47588 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47109 * 120.00605 * 8 6 4 11 11 H 1.48504 * 109.47103 * 240.00392 * 8 6 4 12 12 C 1.34776 * 119.99754 * 84.05884 * 3 2 1 13 13 O 1.21606 * 120.00023 * 5.61521 * 12 3 2 14 14 C 1.47614 * 120.00138 * 185.60894 * 12 3 2 15 15 C 1.41104 * 125.98904 * 173.58515 * 14 12 3 16 16 C 1.35569 * 107.79677 * 180.12268 * 15 14 12 17 17 O 1.35776 * 126.07567 * 179.90677 * 16 15 14 18 18 N 1.35858 * 107.84752 * 359.64441 * 16 15 14 19 19 C 1.46508 * 125.94573 * 180.20705 * 18 16 15 20 20 N 1.31917 * 125.98712 * 353.30581 * 14 12 3 21 21 H 1.08995 * 109.46985 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47268 * 299.99701 * 1 2 3 23 23 H 1.09001 * 109.47420 * 59.99659 * 1 2 3 24 24 H 1.09007 * 109.47017 * 240.00411 * 2 1 3 25 25 H 1.09001 * 109.47420 * 120.00341 * 2 1 3 26 26 H 0.97006 * 120.00006 * 179.97438 * 7 6 4 27 27 H 1.07993 * 126.09881 * 0.03148 * 15 14 12 28 28 H 0.96701 * 113.99650 * 269.69034 * 17 16 15 29 29 H 1.08994 * 109.47134 * 90.00133 * 19 18 16 30 30 H 1.09005 * 109.46840 * 209.99636 * 19 18 16 31 31 H 1.08997 * 109.47068 * 329.99617 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3621 1.9858 -1.1793 5 1 2.0760 3.0107 -1.3642 6 6 3.0797 1.2805 -2.1386 7 7 3.6679 0.1499 -1.8193 8 14 3.2073 1.9402 -3.8815 9 1 2.4625 3.2209 -3.9820 10 1 4.6347 2.1703 -4.2204 11 1 2.6267 0.9540 -4.8279 12 6 2.1290 2.0568 1.1610 13 8 1.9219 1.4897 2.2166 14 6 2.5018 3.4851 1.1512 15 6 2.5301 4.3423 2.2716 16 6 2.9198 5.5688 1.8452 17 8 3.0698 6.6741 2.6194 18 7 3.1393 5.4939 0.5065 19 6 3.5789 6.5938 -0.3558 20 7 2.8718 4.1824 0.0943 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 4.1683 -0.3424 -2.4888 27 1 2.2837 4.0703 3.2872 28 1 2.2709 7.2139 2.6932 29 1 4.6680 6.6119 -0.3947 30 1 3.1818 6.4487 -1.3605 31 1 3.2138 7.5388 0.0463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:23 Heat of formation + Delta-G solvation = 18.932998 kcal Electronic energy + Delta-G solvation = -17368.223350 eV Core-core repulsion = 14459.875562 eV Total energy + Delta-G solvation = -2908.347789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74274 -38.29530 -36.85342 -34.87480 -32.75096 -31.73924 -30.00510 -28.49491 -26.60767 -24.84911 -23.11337 -21.07289 -20.70260 -19.05481 -18.25837 -16.72149 -15.86977 -15.57432 -15.01845 -14.48188 -14.30282 -13.87739 -13.72032 -13.61977 -12.85386 -12.59328 -12.42127 -12.09733 -11.68486 -11.51853 -11.35287 -11.13053 -10.82604 -10.74287 -10.30083 -9.88273 -9.68165 -9.05850 -8.67027 -8.60325 -8.11074 -7.41170 -6.31484 -4.01392 2.05227 2.67522 2.79935 3.18057 3.24294 3.29379 4.07848 4.20376 4.52039 4.80053 4.88696 5.11447 5.36523 5.57244 5.69508 6.03953 6.14114 6.23821 6.39107 6.42290 6.53242 6.80487 6.84245 6.97765 7.13033 7.40263 7.62750 7.79684 8.00110 8.15634 8.52380 9.12685 9.51493 9.93460 10.71681 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.010227 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.336406 B = 2737.205050 C = 3785.458058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 N -0.416 5.416 4 C -0.320 4.320 5 H 0.111 0.889 6 C 0.043 3.957 7 N -0.864 5.864 8 Si 0.920 3.080 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.535 3.465 13 O -0.596 6.596 14 C 0.071 3.929 15 C -0.231 4.231 16 C 0.230 3.770 17 O -0.469 6.469 18 N -0.397 5.397 19 C 0.104 3.896 20 N -0.198 5.198 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.268 0.732 27 H 0.155 0.845 28 H 0.390 0.610 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 10.214 0.586 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.011 4.011 3 N -0.133 5.133 4 C -0.449 4.449 5 H 0.128 0.872 6 C -0.163 4.163 7 N -0.501 5.501 8 Si 0.746 3.254 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.322 3.678 13 O -0.481 6.481 14 C -0.096 4.096 15 C -0.262 4.262 16 C 0.063 3.937 17 O -0.271 6.271 18 N -0.192 5.192 19 C -0.038 4.038 20 N -0.027 5.027 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.172 0.828 28 H 0.245 0.755 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.902 9.697 -0.149 9.883 hybrid contribution -0.280 0.745 -0.164 0.813 sum -2.181 10.442 -0.314 10.672 Atomic orbital electron populations 1.22095 0.98111 1.00288 1.01254 1.21377 0.91579 0.84437 1.03661 1.43424 1.53132 1.11724 1.05064 1.19944 1.33227 0.99363 0.92406 0.87207 1.25475 0.94206 0.96128 1.00484 1.69910 1.30080 1.15738 1.34409 0.85983 0.78055 0.79135 0.82191 1.19082 1.20795 1.20708 1.17304 0.82198 0.83859 0.84443 1.90625 1.57512 1.68703 1.31241 1.22144 1.00941 0.95847 0.90684 1.21065 1.13091 0.91359 1.00702 1.18726 1.03967 0.88493 0.82474 1.84888 1.39889 1.36312 1.66020 1.49796 1.53673 1.10403 1.05303 1.21692 1.00668 0.86211 0.95216 1.78687 1.18526 0.85972 1.19504 0.93180 0.93504 0.92956 0.87826 0.92495 0.92138 0.82779 0.75514 0.91107 0.89285 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.19 37.15 0.38 -2.91 16 2 C 0.11 2.76 5.61 -4.04 -0.02 2.73 16 3 N -0.42 -11.03 2.50 -115.96 -0.29 -11.32 16 4 C -0.32 -8.44 7.97 -15.00 -0.12 -8.56 16 5 H 0.11 2.88 5.84 -52.48 -0.31 2.57 16 6 C 0.04 1.11 5.04 -17.45 -0.09 1.02 16 7 N -0.86 -23.42 11.45 55.50 0.64 -22.78 16 8 Si 0.92 20.09 29.58 -169.99 -5.03 15.06 16 9 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.53 14.20 7.58 -12.43 -0.09 14.11 16 13 O -0.60 -16.64 16.55 5.27 0.09 -16.55 16 14 C 0.07 1.68 6.84 -82.92 -0.57 1.12 16 15 C -0.23 -4.69 10.60 -39.45 -0.42 -5.10 16 16 C 0.23 3.97 7.97 -16.72 -0.13 3.84 16 17 O -0.47 -6.14 13.58 -19.04 -0.26 -6.40 16 18 N -0.40 -7.15 4.04 -68.18 -0.28 -7.42 16 19 C 0.10 1.30 11.42 59.85 0.68 1.99 16 20 N -0.20 -4.48 9.31 33.33 0.31 -4.17 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.10 2.64 5.70 -51.93 -0.30 2.35 16 25 H 0.06 1.43 7.53 -51.93 -0.39 1.04 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 28 H 0.39 2.92 9.06 45.56 0.41 3.33 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -32.90 274.89 -3.73 -36.63 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.67 Total: 4.57 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.38 Total: 8.24 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.38 Total: -45.69 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.17 Total: -22.95 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.90 -3.73 -36.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.562 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds