Wall clock time and date at job start Thu Apr 9 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47070 * 2 1 4 4 C 1.36905 * 120.00053 * 264.06052 * 3 2 1 5 5 H 1.08005 * 119.99718 * 137.88664 * 4 3 2 6 6 C 1.39015 * 120.00427 * 317.88047 * 4 3 2 7 7 N 1.31385 * 119.99668 * 345.72236 * 6 4 3 8 8 Si 1.86797 * 120.00116 * 165.71528 * 6 4 3 9 9 H 1.48493 * 109.47588 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47109 * 120.00605 * 8 6 4 11 11 H 1.48504 * 109.47103 * 240.00392 * 8 6 4 12 12 C 1.34776 * 119.99754 * 84.05884 * 3 2 1 13 13 O 1.21606 * 120.00023 * 5.61521 * 12 3 2 14 14 C 1.47614 * 120.00138 * 185.60894 * 12 3 2 15 15 C 1.41104 * 125.98904 * 173.58515 * 14 12 3 16 16 C 1.35569 * 107.79677 * 180.12268 * 15 14 12 17 17 O 1.35776 * 126.07567 * 179.90677 * 16 15 14 18 18 N 1.35858 * 107.84752 * 359.64441 * 16 15 14 19 19 C 1.46508 * 125.94573 * 180.20705 * 18 16 15 20 20 N 1.31917 * 125.98712 * 353.30581 * 14 12 3 21 21 H 1.08995 * 109.46985 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47268 * 299.99701 * 1 2 3 23 23 H 1.09001 * 109.47420 * 59.99659 * 1 2 3 24 24 H 1.09007 * 109.47017 * 240.00411 * 2 1 3 25 25 H 1.09001 * 109.47420 * 120.00341 * 2 1 3 26 26 H 0.97006 * 120.00006 * 179.97438 * 7 6 4 27 27 H 1.07993 * 126.09881 * 0.03148 * 15 14 12 28 28 H 0.96701 * 113.99650 * 269.69034 * 17 16 15 29 29 H 1.08994 * 109.47134 * 90.00133 * 19 18 16 30 30 H 1.09005 * 109.46840 * 209.99636 * 19 18 16 31 31 H 1.08997 * 109.47068 * 329.99617 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3621 1.9858 -1.1793 5 1 2.0760 3.0107 -1.3642 6 6 3.0797 1.2805 -2.1386 7 7 3.6679 0.1499 -1.8193 8 14 3.2073 1.9402 -3.8815 9 1 2.4625 3.2209 -3.9820 10 1 4.6347 2.1703 -4.2204 11 1 2.6267 0.9540 -4.8279 12 6 2.1290 2.0568 1.1610 13 8 1.9219 1.4897 2.2166 14 6 2.5018 3.4851 1.1512 15 6 2.5301 4.3423 2.2716 16 6 2.9198 5.5688 1.8452 17 8 3.0698 6.6741 2.6194 18 7 3.1393 5.4939 0.5065 19 6 3.5789 6.5938 -0.3558 20 7 2.8718 4.1824 0.0943 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 4.1683 -0.3424 -2.4888 27 1 2.2837 4.0703 3.2872 28 1 2.2709 7.2139 2.6932 29 1 4.6680 6.6119 -0.3947 30 1 3.1818 6.4487 -1.3605 31 1 3.2138 7.5388 0.0463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:23 Heat of formation + Delta-G solvation = -6.644050 kcal Electronic energy + Delta-G solvation = -17369.332454 eV Core-core repulsion = 14459.875562 eV Total energy + Delta-G solvation = -2909.456893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.25523 -40.20006 -38.09684 -36.88037 -34.14208 -33.71223 -31.78024 -30.04075 -27.98783 -26.82191 -24.83107 -22.70343 -22.17492 -20.90037 -19.75548 -18.38458 -17.41665 -17.22712 -16.85530 -16.11493 -16.01625 -15.52991 -15.20281 -15.05211 -14.60421 -14.39574 -13.66089 -13.55113 -13.36360 -13.19562 -12.89366 -12.76820 -12.59987 -12.44739 -12.01304 -11.76214 -11.34304 -11.04034 -10.59585 -10.17294 -9.61448 -9.39645 -8.27513 -6.04880 0.52385 1.09187 1.40670 1.46681 1.48239 1.61093 2.31369 2.59246 2.70895 3.11255 3.29837 3.62964 4.24824 4.40397 4.44396 4.56917 4.59999 4.63768 4.70470 4.80611 4.85312 5.06351 5.21915 5.37380 5.49059 5.63742 5.79436 6.03707 6.49206 6.57015 6.72757 7.13541 7.52531 7.94370 8.76856 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.010227 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.336406 B = 2737.205050 C = 3785.458058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.110 3.890 3 N -0.428 5.428 4 C -0.332 4.332 5 H 0.111 0.889 6 C 0.000 4.000 7 N -0.900 5.900 8 Si 0.988 3.012 9 H -0.256 1.256 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.625 6.625 14 C 0.039 3.961 15 C -0.259 4.259 16 C 0.266 3.734 17 O -0.458 6.458 18 N -0.386 5.386 19 C 0.090 3.910 20 N -0.229 5.229 21 H 0.082 0.918 22 H 0.038 0.962 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.038 0.962 26 H 0.271 0.729 27 H 0.156 0.844 28 H 0.421 0.579 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 12.810 -0.328 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 N -0.144 5.144 4 C -0.461 4.461 5 H 0.128 0.872 6 C -0.203 4.203 7 N -0.538 5.538 8 Si 0.811 3.189 9 H -0.179 1.179 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.308 3.692 13 O -0.512 6.512 14 C -0.126 4.126 15 C -0.290 4.290 16 C 0.097 3.903 17 O -0.264 6.264 18 N -0.181 5.181 19 C -0.050 4.050 20 N -0.060 5.060 21 H 0.100 0.900 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.174 0.826 28 H 0.282 0.718 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.049 12.319 -1.073 12.535 hybrid contribution -0.183 0.118 0.202 0.297 sum -2.232 12.437 -0.871 12.666 Atomic orbital electron populations 1.21958 0.95069 1.02327 1.00910 1.21403 0.94080 0.83828 1.02023 1.43694 1.53203 1.12209 1.05337 1.20144 1.33746 0.99695 0.92466 0.87155 1.26343 0.93495 0.96240 1.04178 1.70021 1.30939 1.17035 1.35772 0.84961 0.77888 0.78987 0.77068 1.17947 1.20837 1.19919 1.17825 0.81854 0.85422 0.84102 1.90567 1.58805 1.69871 1.32006 1.21862 1.03148 0.94981 0.92573 1.21149 1.15292 0.92294 1.00241 1.18449 1.00721 0.88783 0.82320 1.84851 1.41867 1.34963 1.64740 1.50075 1.51900 1.09879 1.06273 1.22215 1.01627 0.85961 0.95164 1.78489 1.19554 0.88050 1.19862 0.89955 0.94322 0.92619 0.89005 0.94389 0.91897 0.82597 0.71813 0.89973 0.88719 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 10.19 71.98 0.73 -5.26 16 2 C 0.11 5.55 5.61 86.38 0.48 6.04 16 3 N -0.43 -23.38 2.50 -639.05 -1.60 -24.98 16 4 C -0.33 -17.76 7.97 84.09 0.67 -17.09 16 5 H 0.11 5.83 5.84 -2.91 -0.02 5.81 16 6 C 0.00 -0.02 5.04 84.95 0.43 0.41 16 7 N -0.90 -49.67 11.45 21.68 0.25 -49.42 16 8 Si 0.99 40.87 29.58 68.60 2.03 42.90 16 9 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 C 0.52 28.65 7.58 86.72 0.66 29.31 16 13 O -0.63 -36.46 16.55 -4.05 -0.07 -36.53 16 14 C 0.04 1.90 6.84 42.31 0.29 2.19 16 15 C -0.26 -10.40 10.60 22.36 0.24 -10.16 16 16 C 0.27 8.50 7.97 83.45 0.67 9.17 16 17 O -0.46 -9.98 13.58 -91.04 -1.24 -11.22 16 18 N -0.39 -12.93 4.04 -480.54 -1.94 -14.87 16 19 C 0.09 1.90 11.42 127.77 1.46 3.36 16 20 N -0.23 -10.26 9.31 -48.45 -0.45 -10.71 16 21 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.09 4.85 5.70 -2.38 -0.01 4.83 16 25 H 0.04 2.01 7.53 -2.39 -0.02 1.99 16 26 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 27 H 0.16 5.99 8.06 -2.91 -0.02 5.97 16 28 H 0.42 4.10 9.06 -74.06 -0.67 3.43 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.51 274.89 3.10 -70.41 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.49 Total: 16.47 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 5.62 Total: 17.96 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -3.74 Total: -99.99 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.30 Total: -47.75 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -73.51 3.10 -70.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.770 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds