Wall clock time and date at job start Thu Apr 9 2020 12:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00065 * 2 1 4 4 C 1.52999 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47307 * 65.00131 * 4 3 2 6 6 C 1.36754 * 120.00728 * 89.99629 * 5 4 3 7 7 H 1.07998 * 120.00342 * 222.63662 * 6 5 4 8 8 C 1.39106 * 119.99546 * 42.63175 * 6 5 4 9 9 N 1.31337 * 119.99923 * 6.59205 * 8 6 5 10 10 Si 1.86791 * 120.00043 * 186.58586 * 8 6 5 11 11 H 1.48501 * 109.47536 * 90.00228 * 10 8 6 12 12 H 1.48506 * 109.47427 * 210.00060 * 10 8 6 13 13 H 1.48502 * 109.47188 * 330.00207 * 10 8 6 14 14 C 1.34781 * 119.99867 * 269.99730 * 5 4 3 15 15 O 1.21669 * 119.99831 * 5.07333 * 14 5 4 16 16 C 1.47215 * 120.00077 * 185.07166 * 14 5 4 17 17 N 1.31695 * 125.86126 * 5.43499 * 16 14 5 18 18 C 1.33093 * 109.21968 * 179.86393 * 17 16 14 19 19 C 1.35576 * 108.40244 * 0.39711 * 18 17 16 20 20 N 1.36022 * 107.08221 * 359.76167 * 19 18 17 21 21 H 0.97003 * 126.49744 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47416 * 300.00102 * 1 2 3 23 23 H 1.08997 * 109.47136 * 60.00483 * 1 2 3 24 24 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47128 * 60.00067 * 3 2 1 26 26 H 1.09001 * 109.46797 * 300.00175 * 3 2 1 27 27 H 1.08998 * 109.47344 * 304.99230 * 4 3 2 28 28 H 1.09007 * 109.47061 * 184.99821 * 4 3 2 29 29 H 0.96995 * 119.99541 * 174.99855 * 9 8 6 30 30 H 1.08001 * 125.79500 * 180.15822 * 18 17 16 31 31 H 1.08001 * 126.45840 * 179.75440 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2656 1.3450 -2.3375 7 1 3.9321 1.0482 -3.3209 8 6 4.9901 2.5212 -2.1743 9 7 5.5064 2.8173 -1.0035 10 14 5.2288 3.6794 -3.6202 11 1 4.1164 4.6624 -3.6561 12 1 6.5198 4.3981 -3.4709 13 1 5.2402 2.8985 -4.8833 14 6 4.0948 -0.7755 -1.3355 15 8 3.7494 -1.4758 -0.4024 16 6 4.6430 -1.3918 -2.5549 17 7 5.1432 -0.7459 -3.5879 18 6 5.5446 -1.6258 -4.5022 19 6 5.2834 -2.8731 -4.0396 20 7 4.7147 -2.7330 -2.8119 21 1 4.4161 -3.4487 -2.2293 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8463 -0.8900 27 1 3.8514 0.5683 0.8410 28 1 3.9785 2.1766 0.0889 29 1 6.0718 3.5994 -0.9067 30 1 5.9976 -1.3866 -5.4530 31 1 5.4882 -3.8028 -4.5497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597754453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:32 Heat of formation + Delta-G solvation = -2.161756 kcal Electronic energy + Delta-G solvation = -17582.166980 eV Core-core repulsion = 14672.904454 eV Total energy + Delta-G solvation = -2909.262526 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25750 -38.27303 -36.76238 -34.73956 -31.89106 -31.39111 -29.78859 -28.24057 -25.72195 -24.77989 -23.01670 -21.02135 -20.71194 -19.23668 -18.23950 -16.17681 -15.75419 -15.42429 -15.24181 -14.48861 -14.32585 -14.20772 -13.99566 -13.24424 -13.11026 -12.82377 -12.56300 -11.83919 -11.44848 -11.20116 -11.00051 -10.91836 -10.42119 -10.25435 -10.16722 -9.40327 -9.30376 -8.96295 -8.87668 -8.54386 -7.84910 -7.34367 -6.21310 -3.92162 2.30718 3.24985 3.33065 3.40113 3.55491 3.57574 4.27720 4.55047 4.63863 4.86434 5.15908 5.44869 5.67445 5.72205 5.77176 6.00184 6.04874 6.06416 6.15951 6.23872 6.41970 6.69204 6.91474 7.31070 7.31899 7.74412 7.90589 7.93666 8.03511 8.59241 8.76916 9.23422 9.53328 9.97740 10.81021 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.014214 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.880066 B = 1969.385055 C = 3432.517318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.112 3.888 5 N -0.407 5.407 6 C -0.293 4.293 7 H 0.106 0.894 8 C 0.040 3.960 9 N -0.883 5.883 10 Si 0.923 3.077 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.264 1.264 14 C 0.541 3.459 15 O -0.593 6.593 16 C 0.194 3.806 17 N -0.414 5.414 18 C -0.045 4.045 19 C -0.064 4.064 20 N -0.546 5.546 21 H 0.420 0.580 22 H 0.030 0.970 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.269 0.731 30 H 0.164 0.836 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -4.514 -2.926 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.029 4.029 4 C -0.011 4.011 5 N -0.123 5.123 6 C -0.422 4.422 7 H 0.123 0.877 8 C -0.163 4.163 9 N -0.523 5.523 10 Si 0.750 3.250 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.189 1.189 14 C 0.328 3.672 15 O -0.477 6.477 16 C -0.068 4.068 17 N -0.135 5.135 18 C -0.198 4.198 19 C -0.202 4.202 20 N -0.148 5.148 21 H 0.258 0.742 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.181 0.819 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.749 -3.912 -2.409 5.930 hybrid contribution -0.074 -0.442 -0.582 0.735 sum -3.823 -4.354 -2.991 6.521 Atomic orbital electron populations 1.22615 0.83619 1.01508 0.98818 1.88186 1.17291 1.28054 1.95066 1.23143 0.96438 0.84358 0.98980 1.21833 0.89450 1.02949 0.86868 1.43028 1.54646 1.02901 1.11761 1.19819 1.32405 1.01718 0.88283 0.87704 1.25479 0.94937 0.98681 0.97214 1.69548 1.31679 1.28136 1.22953 0.85968 0.77351 0.79597 0.82056 1.20776 1.21162 1.18865 1.16823 0.82695 0.83863 0.83787 1.90688 1.55598 1.62377 1.39084 1.23267 1.05855 0.79498 0.98181 1.70961 1.11619 1.31153 0.99739 1.22611 1.07078 0.88872 1.01205 1.22763 1.07695 1.01032 0.88680 1.43246 1.46557 1.09108 1.15876 0.74187 0.95161 0.95009 0.90732 0.94154 0.93339 0.91944 0.84661 0.92034 0.81861 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -8.05 9.28 -48.25 -0.45 -8.50 16 3 C 0.05 1.02 6.28 37.16 0.23 1.25 16 4 C 0.11 2.73 5.43 -4.05 -0.02 2.71 16 5 N -0.41 -10.70 2.49 -116.12 -0.29 -10.99 16 6 C -0.29 -7.77 7.59 -15.03 -0.11 -7.89 16 7 H 0.11 2.84 6.49 -52.49 -0.34 2.50 16 8 C 0.04 1.04 5.25 -17.44 -0.09 0.94 16 9 N -0.88 -23.53 10.96 55.50 0.61 -22.92 16 10 Si 0.92 20.57 29.56 -169.99 -5.03 15.54 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.54 14.16 7.31 -12.61 -0.09 14.07 16 15 O -0.59 -16.06 15.67 -7.80 -0.12 -16.18 16 16 C 0.19 4.56 7.67 -154.46 -1.19 3.37 16 17 N -0.41 -9.65 8.22 -11.28 -0.09 -9.74 16 18 C -0.04 -0.83 11.85 -17.96 -0.21 -1.04 16 19 C -0.06 -1.01 12.03 -16.65 -0.20 -1.21 16 20 N -0.55 -10.06 6.18 -10.65 -0.07 -10.13 16 21 H 0.42 6.71 8.96 -40.82 -0.37 6.34 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.57 7.50 -51.93 -0.39 1.18 16 28 H 0.14 3.40 5.31 -51.93 -0.28 3.13 16 29 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 30 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 271.49 15.07 4.09 4.09 Total: -1.00 -32.02 271.49 -5.38 -37.40 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.47 Total: 7.57 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -0.57 Total: 13.84 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.16 Total: -53.77 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.57 Total: -24.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.02 -5.38 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.240 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds