Wall clock time and date at job start Thu Apr 9 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00065 * 2 1 4 4 C 1.52999 * 109.47170 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47307 * 65.00131 * 4 3 2 6 6 C 1.36754 * 120.00728 * 89.99629 * 5 4 3 7 7 H 1.07998 * 120.00342 * 222.63662 * 6 5 4 8 8 C 1.39106 * 119.99546 * 42.63175 * 6 5 4 9 9 N 1.31337 * 119.99923 * 6.59205 * 8 6 5 10 10 Si 1.86791 * 120.00043 * 186.58586 * 8 6 5 11 11 H 1.48501 * 109.47536 * 90.00228 * 10 8 6 12 12 H 1.48506 * 109.47427 * 210.00060 * 10 8 6 13 13 H 1.48502 * 109.47188 * 330.00207 * 10 8 6 14 14 C 1.34781 * 119.99867 * 269.99730 * 5 4 3 15 15 O 1.21669 * 119.99831 * 5.07333 * 14 5 4 16 16 C 1.47215 * 120.00077 * 185.07166 * 14 5 4 17 17 N 1.31695 * 125.86126 * 5.43499 * 16 14 5 18 18 C 1.33093 * 109.21968 * 179.86393 * 17 16 14 19 19 C 1.35576 * 108.40244 * 0.39711 * 18 17 16 20 20 N 1.36022 * 107.08221 * 359.76167 * 19 18 17 21 21 H 0.97003 * 126.49744 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47416 * 300.00102 * 1 2 3 23 23 H 1.08997 * 109.47136 * 60.00483 * 1 2 3 24 24 H 1.09005 * 109.47297 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47128 * 60.00067 * 3 2 1 26 26 H 1.09001 * 109.46797 * 300.00175 * 3 2 1 27 27 H 1.08998 * 109.47344 * 304.99230 * 4 3 2 28 28 H 1.09007 * 109.47061 * 184.99821 * 4 3 2 29 29 H 0.96995 * 119.99541 * 174.99855 * 9 8 6 30 30 H 1.08001 * 125.79500 * 180.15822 * 18 17 16 31 31 H 1.08001 * 126.45840 * 179.75440 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2656 1.3450 -2.3375 7 1 3.9321 1.0482 -3.3209 8 6 4.9901 2.5212 -2.1743 9 7 5.5064 2.8173 -1.0035 10 14 5.2288 3.6794 -3.6202 11 1 4.1164 4.6624 -3.6561 12 1 6.5198 4.3981 -3.4709 13 1 5.2402 2.8985 -4.8833 14 6 4.0948 -0.7755 -1.3355 15 8 3.7494 -1.4758 -0.4024 16 6 4.6430 -1.3918 -2.5549 17 7 5.1432 -0.7459 -3.5879 18 6 5.5446 -1.6258 -4.5022 19 6 5.2834 -2.8731 -4.0396 20 7 4.7147 -2.7330 -2.8119 21 1 4.4161 -3.4487 -2.2293 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8463 -0.8900 27 1 3.8514 0.5683 0.8410 28 1 3.9785 2.1766 0.0889 29 1 6.0718 3.5994 -0.9067 30 1 5.9976 -1.3866 -5.4530 31 1 5.4882 -3.8028 -4.5497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:31 Heat of formation + Delta-G solvation = -24.341286 kcal Electronic energy + Delta-G solvation = -17583.128757 eV Core-core repulsion = 14672.904454 eV Total energy + Delta-G solvation = -2910.224302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79032 -40.14141 -38.42235 -36.67897 -33.58196 -33.22584 -31.47866 -29.81212 -27.18426 -26.72799 -24.70943 -22.75154 -22.17253 -21.02231 -19.96801 -17.92035 -17.48886 -17.14940 -16.95602 -16.21073 -16.00970 -15.92314 -15.59811 -14.74268 -14.61940 -14.51815 -14.25223 -13.47256 -13.27081 -12.99574 -12.76416 -12.61520 -12.27089 -11.99827 -11.88910 -11.10788 -10.97777 -10.75718 -10.52320 -10.38152 -9.44191 -9.19275 -8.16970 -5.94306 0.72191 1.50085 1.52066 1.65067 1.99450 2.05811 2.45654 2.76601 3.04170 3.18844 3.26588 3.96778 4.29938 4.35281 4.40816 4.52475 4.57174 4.58882 4.65068 4.70329 4.79621 5.02171 5.25326 5.36601 5.69647 5.92352 6.08509 6.41905 6.47246 6.62075 7.13388 7.31057 7.60738 8.02637 8.85320 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.014214 C = 0.008155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.880066 B = 1969.385055 C = 3432.517318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.059 3.941 4 C 0.111 3.889 5 N -0.421 5.421 6 C -0.300 4.300 7 H 0.096 0.904 8 C 0.001 3.999 9 N -0.910 5.910 10 Si 0.984 3.016 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.531 3.469 15 O -0.617 6.617 16 C 0.138 3.862 17 N -0.445 5.445 18 C -0.075 4.075 19 C -0.014 4.014 20 N -0.533 5.533 21 H 0.431 0.569 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.125 0.875 29 H 0.271 0.729 30 H 0.194 0.806 31 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -5.406 -4.618 8.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.018 4.018 4 C -0.012 4.012 5 N -0.137 5.137 6 C -0.429 4.429 7 H 0.113 0.887 8 C -0.199 4.199 9 N -0.550 5.550 10 Si 0.809 3.191 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.319 3.681 15 O -0.504 6.504 16 C -0.122 4.122 17 N -0.167 5.167 18 C -0.227 4.227 19 C -0.152 4.152 20 N -0.137 5.137 21 H 0.271 0.729 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.211 0.789 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.969 -4.801 -4.077 7.444 hybrid contribution -0.001 -0.337 -0.125 0.360 sum -3.970 -5.138 -4.202 7.734 Atomic orbital electron populations 1.22852 0.80833 1.02981 1.00372 1.88123 1.20414 1.28286 1.95364 1.22942 0.94211 0.84589 1.00080 1.21771 0.91928 1.01603 0.85884 1.43221 1.55128 1.03293 1.12087 1.19791 1.32979 1.02100 0.88060 0.88699 1.26193 0.94487 0.99708 0.99508 1.69663 1.32244 1.28685 1.24413 0.85050 0.77453 0.77702 0.78911 1.19600 1.20975 1.19007 1.17251 0.82213 0.83866 0.84783 1.90631 1.56695 1.62774 1.40305 1.22657 1.09782 0.81499 0.98257 1.70775 1.11746 1.33493 1.00636 1.23247 1.08194 0.89355 1.01892 1.23711 1.02585 1.02459 0.86487 1.43288 1.45718 1.07799 1.16854 0.72899 0.92740 0.94191 0.89395 0.91178 0.93832 0.93949 0.85787 0.91897 0.78909 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.72 9.28 -136.53 -1.27 -18.99 16 3 C 0.06 2.52 6.28 71.98 0.45 2.97 16 4 C 0.11 5.62 5.43 86.38 0.47 6.09 16 5 N -0.42 -22.89 2.49 -639.52 -1.59 -24.48 16 6 C -0.30 -16.32 7.59 84.13 0.64 -15.68 16 7 H 0.10 5.27 6.49 -2.91 -0.02 5.25 16 8 C 0.00 0.06 5.25 84.98 0.45 0.51 16 9 N -0.91 -49.48 10.96 21.69 0.24 -49.25 16 10 Si 0.98 42.33 29.56 68.60 2.03 44.36 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 C 0.53 28.62 7.31 86.60 0.63 29.25 16 15 O -0.62 -34.53 15.67 8.20 0.13 -34.40 16 16 C 0.14 6.51 7.67 136.17 1.04 7.56 16 17 N -0.44 -20.56 8.22 -189.59 -1.56 -22.11 16 18 C -0.07 -2.55 11.85 83.89 0.99 -1.56 16 19 C -0.01 -0.38 12.03 83.43 1.00 0.62 16 20 N -0.53 -18.65 6.18 -187.62 -1.16 -19.81 16 21 H 0.43 12.98 8.96 -92.71 -0.83 12.15 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 2.24 7.50 -2.39 -0.02 2.22 16 28 H 0.12 6.50 5.31 -2.38 -0.01 6.48 16 29 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.19 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -72.08 271.49 4.07 -68.00 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.33 Total: 24.84 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 6.93 Total: 31.84 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.07 Total: -115.65 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -1.14 Total: -53.38 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.08 4.07 -68.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds