Wall clock time and date at job start Thu Apr 9 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47619 * 2 1 4 4 C 1.36905 * 119.99574 * 260.37324 * 3 2 1 5 5 H 1.08007 * 119.99786 * 198.51807 * 4 3 2 6 6 C 1.38980 * 120.00313 * 18.52092 * 4 3 2 7 7 N 1.31417 * 120.00067 * 13.51552 * 6 4 3 8 8 Si 1.86803 * 120.00094 * 193.51748 * 6 4 3 9 9 H 1.48503 * 109.47095 * 59.99779 * 8 6 4 10 10 H 1.48494 * 109.47055 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46914 * 300.00007 * 8 6 4 12 12 C 1.34769 * 120.00227 * 80.37008 * 3 2 1 13 13 O 1.21776 * 120.00363 * 180.67707 * 12 3 2 14 14 C 1.46260 * 120.00117 * 0.67098 * 12 3 2 15 15 C 1.36855 * 126.83340 * 350.17488 * 14 12 3 16 16 N 1.33205 * 107.95607 * 180.02562 * 15 14 12 17 17 C 1.31557 * 109.77000 * 359.97438 * 16 15 14 18 18 O 1.35200 * 125.48493 * 180.02562 * 17 16 15 19 19 N 1.34993 * 109.02609 * 359.97438 * 17 16 15 20 20 C 1.46503 * 126.53883 * 180.26149 * 19 17 16 21 21 H 1.09003 * 109.46801 * 307.10269 * 1 2 3 22 22 H 1.09006 * 109.46639 * 67.09345 * 1 2 3 23 23 H 1.08999 * 109.47601 * 187.09590 * 1 2 3 24 24 H 1.08999 * 109.47087 * 239.99373 * 2 1 3 25 25 H 1.09004 * 109.46639 * 119.99891 * 2 1 3 26 26 H 0.96994 * 120.00035 * 180.02562 * 7 6 4 27 27 H 1.07999 * 126.02151 * 0.02562 * 15 14 12 28 28 H 0.96699 * 113.99736 * 269.95732 * 18 17 16 29 29 H 1.08997 * 109.47266 * 264.37081 * 20 19 17 30 30 H 1.08999 * 109.47489 * 24.37671 * 20 19 17 31 31 H 1.08999 * 109.46732 * 144.37275 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4336 1.9603 -1.1690 5 1 3.0597 2.8400 -1.1432 6 6 2.0494 1.4164 -2.3888 7 7 1.0869 0.5228 -2.4359 8 14 2.9011 1.9554 -3.9616 9 1 4.3505 1.6451 -3.8710 10 1 2.3117 1.2317 -5.1166 11 1 2.7185 3.4173 -4.1473 12 6 2.0591 2.0816 1.1507 13 8 2.4535 3.2337 1.1486 14 6 1.6293 1.4580 2.4019 15 6 0.9930 0.2546 2.5427 16 7 0.7777 0.0534 3.8417 17 6 1.2464 1.0697 4.5332 18 8 1.1964 1.1934 5.8786 19 7 1.7864 1.9687 3.6830 20 6 2.4213 3.2386 4.0442 21 1 -0.3633 0.6200 0.8197 22 1 -0.3633 0.4000 -0.9467 23 1 -0.3634 -1.0197 0.1269 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.8190 0.1429 -3.2871 27 1 0.7146 -0.4141 1.7417 28 1 0.4002 1.6358 6.2035 29 1 1.6928 4.0453 3.9623 30 1 2.7882 3.1830 5.0690 31 1 3.2554 3.4325 3.3697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:39 Heat of formation + Delta-G solvation = 33.590878 kcal Electronic energy + Delta-G solvation = -17662.657593 eV Core-core repulsion = 14754.945417 eV Total energy + Delta-G solvation = -2907.712175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.74341 -38.49332 -36.96367 -35.45059 -33.52618 -32.10915 -30.05855 -28.47500 -26.58524 -25.08505 -22.56587 -21.74416 -21.26300 -19.06033 -18.22362 -16.98395 -16.40975 -16.16591 -15.23945 -14.76037 -14.36257 -14.03617 -13.86296 -13.52082 -12.87622 -12.49881 -12.33077 -11.98771 -11.91600 -11.47700 -11.17043 -11.11210 -10.86917 -10.45346 -10.24715 -10.02194 -9.71759 -9.29761 -9.03972 -8.58435 -7.85699 -7.79468 -6.42255 -3.96476 1.83991 2.71577 3.09598 3.18775 3.21904 3.24673 4.01569 4.16827 4.23292 4.74691 5.04875 5.09018 5.42945 5.49893 5.68666 5.80498 5.97152 6.13457 6.40176 6.52314 6.56455 6.69210 6.85547 7.01996 7.22600 7.36752 7.73011 7.85338 7.98164 8.26677 8.40450 9.03560 9.25830 9.83998 10.53836 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.043179 B = 0.007563 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.304198 B = 3701.126405 C = 4250.590521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.411 5.411 4 C -0.297 4.297 5 H 0.104 0.896 6 C 0.030 3.970 7 N -0.865 5.865 8 Si 0.933 3.067 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.501 3.499 13 O -0.601 6.601 14 C -0.029 4.029 15 C -0.009 4.009 16 N -0.490 5.490 17 C 0.356 3.644 18 O -0.444 6.444 19 N -0.436 5.436 20 C 0.078 3.922 21 H 0.039 0.961 22 H 0.101 0.899 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.051 0.949 26 H 0.271 0.729 27 H 0.215 0.785 28 H 0.394 0.606 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -0.218 7.447 7.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 N -0.127 5.127 4 C -0.425 4.425 5 H 0.122 0.878 6 C -0.174 4.174 7 N -0.504 5.504 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.290 3.710 13 O -0.488 6.488 14 C -0.145 4.145 15 C -0.160 4.160 16 N -0.220 5.220 17 C 0.057 3.943 18 O -0.244 6.244 19 N -0.130 5.130 20 C -0.064 4.064 21 H 0.057 0.943 22 H 0.120 0.880 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.231 0.769 28 H 0.250 0.750 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.679 -0.586 7.765 7.817 hybrid contribution 0.169 1.174 -0.808 1.435 sum -0.509 0.588 6.957 7.000 Atomic orbital electron populations 1.22438 0.96256 0.99768 1.04172 1.21965 0.94785 0.83625 1.01776 1.43441 1.52718 1.10817 1.05723 1.19735 1.28089 1.12965 0.81756 0.87813 1.25384 0.95601 0.96834 0.99556 1.69972 1.25214 1.28456 1.26803 0.85883 0.79384 0.78943 0.79857 1.19805 1.20760 1.19746 1.16424 0.86507 0.85803 0.82267 1.90627 1.54382 1.17425 1.86402 1.21262 1.09833 0.98055 0.85398 1.24201 1.02056 0.96481 0.93277 1.70248 1.22948 1.23689 1.05069 1.20196 1.02590 0.88353 0.83121 1.84785 1.46539 1.80716 1.12389 1.45532 1.44043 1.17300 1.06123 1.22044 0.99793 0.82748 1.01846 0.94259 0.88026 0.93692 0.87588 0.93129 0.91844 0.76908 0.75031 0.90616 0.90136 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 8.03 37.16 0.30 -3.13 16 2 C 0.10 2.22 4.79 -4.04 -0.02 2.20 16 3 N -0.41 -10.34 2.65 -116.44 -0.31 -10.65 16 4 C -0.30 -7.91 9.36 -15.01 -0.14 -8.05 16 5 H 0.10 2.88 7.35 -52.48 -0.39 2.50 16 6 C 0.03 0.74 5.06 -17.45 -0.09 0.65 16 7 N -0.87 -21.00 8.28 55.50 0.46 -20.54 16 8 Si 0.93 19.59 29.57 -169.99 -5.03 14.56 16 9 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 C 0.50 12.55 7.44 -13.04 -0.10 12.45 16 13 O -0.60 -16.34 14.87 5.12 0.08 -16.27 16 14 C -0.03 -0.63 6.62 -81.98 -0.54 -1.17 16 15 C -0.01 -0.18 8.26 -17.46 -0.14 -0.32 16 16 N -0.49 -9.68 11.22 -14.58 -0.16 -9.85 16 17 C 0.36 6.38 9.01 -89.53 -0.81 5.57 16 18 O -0.44 -6.15 13.44 -17.30 -0.23 -6.38 16 19 N -0.44 -8.23 3.20 -122.11 -0.39 -8.62 16 20 C 0.08 1.20 10.42 59.85 0.62 1.82 16 21 H 0.04 0.80 6.01 -51.93 -0.31 0.49 16 22 H 0.10 2.32 6.02 -51.93 -0.31 2.01 16 23 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.11 2.45 5.98 -51.93 -0.31 2.14 16 25 H 0.05 1.02 5.14 -51.93 -0.27 0.75 16 26 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 27 H 0.22 4.08 3.07 -52.49 -0.16 3.92 16 28 H 0.39 3.28 9.06 45.56 0.41 3.69 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.10 1.71 7.07 -51.93 -0.37 1.34 16 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -30.89 255.82 -4.75 -35.64 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.10 Total: 8.22 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.92 Total: 10.03 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.40 Total: -49.65 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.16 Total: -22.65 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.89 -4.75 -35.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.229 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds