Wall clock time and date at job start Thu Apr 9 2020 12:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46978 * 2 1 4 4 C 1.50696 * 109.47596 * 119.99797 * 2 1 3 5 5 H 1.08000 * 119.99879 * 119.99857 * 4 2 1 6 6 C 1.37882 * 120.00125 * 300.00569 * 4 2 1 7 7 N 1.31506 * 120.00227 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99664 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47207 * 90.00681 * 8 6 4 10 10 H 1.48504 * 109.46909 * 210.00135 * 8 6 4 11 11 H 1.48497 * 109.47396 * 330.00002 * 8 6 4 12 12 N 1.46501 * 109.47066 * 240.00440 * 2 1 3 13 13 C 1.34768 * 120.00140 * 84.99794 * 12 2 1 14 14 O 1.21729 * 120.00450 * 354.46021 * 13 12 2 15 15 C 1.46381 * 120.00025 * 174.46908 * 13 12 2 16 16 C 1.36726 * 126.82359 * 4.86442 * 15 13 12 17 17 N 1.33220 * 107.96253 * 179.97438 * 16 15 13 18 18 C 1.31538 * 109.76103 * 359.97438 * 17 16 15 19 19 O 1.35213 * 125.49162 * 180.02562 * 18 17 16 20 20 N 1.34945 * 109.01509 * 359.76164 * 18 17 16 21 21 C 1.46496 * 126.54571 * 180.26527 * 20 18 17 22 22 H 1.08997 * 109.47896 * 59.99924 * 1 2 3 23 23 H 1.09008 * 109.47110 * 299.99548 * 1 2 3 24 24 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00318 * 179.97438 * 7 6 4 26 26 H 0.97004 * 119.99608 * 264.99191 * 12 2 1 27 27 H 1.07995 * 126.02083 * 359.94053 * 16 15 13 28 28 H 0.96696 * 114.00207 * 90.02019 * 19 18 17 29 29 H 1.09009 * 109.47038 * 269.69785 * 21 20 18 30 30 H 1.09003 * 109.47077 * 29.68744 * 21 20 18 31 31 H 1.08998 * 109.47640 * 149.69144 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3571 14 8 1.7635 1.1343 -2.4388 15 6 2.7477 -0.6737 -3.5199 16 6 3.1383 -1.9807 -3.6128 17 7 3.6338 -2.1755 -4.8340 18 6 3.5761 -1.0555 -5.5213 19 8 3.9937 -0.8950 -6.7973 20 7 3.0278 -0.0938 -4.7496 21 6 2.7786 1.2974 -5.1349 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9041 -0.5273 4.4375 26 1 2.2491 -1.6317 -1.1527 27 1 3.0597 -2.7240 -2.8334 28 1 3.3105 -1.0680 -7.4594 29 1 3.6492 1.9046 -4.8869 30 1 2.5930 1.3496 -6.2077 31 1 1.9083 1.6732 -4.5969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601022632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:42 Heat of formation + Delta-G solvation = -4.896560 kcal Electronic energy + Delta-G solvation = -16925.508624 eV Core-core repulsion = 14016.127508 eV Total energy + Delta-G solvation = -2909.381116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20525 -38.91746 -37.42788 -35.22436 -34.04199 -32.48787 -30.62504 -28.52738 -27.11573 -25.23522 -23.37876 -21.76617 -20.75952 -19.70188 -18.70122 -17.70420 -16.69158 -16.10642 -15.81515 -15.27071 -14.75752 -14.52245 -13.96836 -13.84159 -13.18860 -12.99377 -12.79069 -12.70782 -12.28842 -12.23075 -11.87216 -11.34497 -10.86502 -10.25305 -10.23091 -9.82842 -9.76735 -9.38048 -9.29382 -8.81176 -8.55894 -8.19959 -6.23944 -4.27276 1.28438 2.19857 2.66170 3.20770 3.33063 3.36153 3.64093 3.68568 3.86266 4.28239 4.68505 4.83699 5.10492 5.13949 5.19014 5.37618 5.50979 5.95604 6.25402 6.31707 6.36487 6.44337 6.50165 6.78986 7.11178 7.17751 7.39011 7.43392 7.74504 8.06494 8.42681 8.66933 8.78796 9.35679 10.88070 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.047922 B = 0.005830 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.138646 B = 4801.306054 C = 5178.373648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.241 3.759 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.683 5.683 13 C 0.582 3.418 14 O -0.560 6.560 15 C -0.063 4.063 16 C 0.047 3.953 17 N -0.488 5.488 18 C 0.382 3.618 19 O -0.440 6.440 20 N -0.429 5.429 21 C 0.068 3.932 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.268 0.732 26 H 0.399 0.601 27 H 0.188 0.812 28 H 0.400 0.600 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 1.078 -16.676 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.138 3.862 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.330 5.330 13 C 0.367 3.633 14 O -0.441 6.441 15 C -0.180 4.180 16 C -0.107 4.107 17 N -0.216 5.216 18 C 0.083 3.917 19 O -0.241 6.241 20 N -0.122 5.122 21 C -0.074 4.074 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.233 0.767 27 H 0.205 0.795 28 H 0.257 0.743 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.270 1.508 -16.710 16.780 hybrid contribution -1.131 0.998 0.157 1.517 sum -1.402 2.506 -16.553 16.800 Atomic orbital electron populations 1.22459 0.99036 1.01083 0.99450 1.19170 0.90358 0.94524 0.82171 0.93291 1.21016 1.33494 1.14639 0.88362 0.89932 1.24812 0.95450 0.96672 0.95484 1.69857 1.44686 1.40038 0.98075 0.86885 0.80585 0.83591 0.77464 1.20235 1.22122 1.18721 1.45913 1.64352 1.13930 1.08836 1.16689 0.78973 0.85707 0.81899 1.90746 1.51708 1.17626 1.83980 1.20975 1.13200 0.94957 0.88838 1.22593 0.99283 0.93944 0.94856 1.70259 1.22551 1.22726 1.06100 1.20206 1.00251 0.84438 0.86810 1.84829 1.38948 1.90234 1.10082 1.45621 1.43865 1.11504 1.11219 1.22246 1.05040 0.78420 1.01654 0.94371 0.93347 0.92618 0.92202 0.76665 0.79512 0.74293 0.90138 0.89922 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.24 5.55 2.11 -69.09 -0.15 5.41 16 3 H 0.05 1.24 6.72 -51.93 -0.35 0.89 16 4 C -0.54 -14.11 9.31 -34.44 -0.32 -14.44 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 8 Si 0.89 21.23 24.37 -169.99 -4.14 17.09 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.22 6.53 56.52 0.37 -5.86 16 12 N -0.68 -13.18 5.05 -56.34 -0.28 -13.47 16 13 C 0.58 10.94 7.73 -12.99 -0.10 10.83 16 14 O -0.56 -11.85 14.54 5.16 0.08 -11.77 16 15 C -0.06 -1.01 6.92 -81.97 -0.57 -1.58 16 16 C 0.05 0.69 11.36 -17.50 -0.20 0.49 16 17 N -0.49 -7.44 11.22 -14.62 -0.16 -7.60 16 18 C 0.38 5.22 9.01 -89.59 -0.81 4.41 16 19 O -0.44 -4.52 13.52 -17.33 -0.23 -4.75 16 20 N -0.43 -6.04 3.20 -122.12 -0.39 -6.43 16 21 C 0.07 0.76 10.68 59.84 0.64 1.40 16 22 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 23 H 0.05 1.08 3.27 -51.92 -0.17 0.91 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.40 6.71 7.47 -40.82 -0.30 6.41 16 27 H 0.19 2.23 7.45 -52.49 -0.39 1.84 16 28 H 0.40 1.86 9.06 45.56 0.41 2.27 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.11 1.39 6.45 -51.93 -0.33 1.06 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -33.11 267.08 -4.03 -37.14 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.42 Total: 5.44 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.26 Total: 5.46 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.07 Total: -52.63 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.16 Total: -16.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.11 -4.03 -37.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.246 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds