Wall clock time and date at job start Thu Apr 9 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46978 * 2 1 4 4 C 1.50696 * 109.47596 * 119.99797 * 2 1 3 5 5 H 1.08000 * 119.99879 * 119.99857 * 4 2 1 6 6 C 1.37882 * 120.00125 * 300.00569 * 4 2 1 7 7 N 1.31506 * 120.00227 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99664 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47207 * 90.00681 * 8 6 4 10 10 H 1.48504 * 109.46909 * 210.00135 * 8 6 4 11 11 H 1.48497 * 109.47396 * 330.00002 * 8 6 4 12 12 N 1.46501 * 109.47066 * 240.00440 * 2 1 3 13 13 C 1.34768 * 120.00140 * 84.99794 * 12 2 1 14 14 O 1.21729 * 120.00450 * 354.46021 * 13 12 2 15 15 C 1.46381 * 120.00025 * 174.46908 * 13 12 2 16 16 C 1.36726 * 126.82359 * 4.86442 * 15 13 12 17 17 N 1.33220 * 107.96253 * 179.97438 * 16 15 13 18 18 C 1.31538 * 109.76103 * 359.97438 * 17 16 15 19 19 O 1.35213 * 125.49162 * 180.02562 * 18 17 16 20 20 N 1.34945 * 109.01509 * 359.76164 * 18 17 16 21 21 C 1.46496 * 126.54571 * 180.26527 * 20 18 17 22 22 H 1.08997 * 109.47896 * 59.99924 * 1 2 3 23 23 H 1.09008 * 109.47110 * 299.99548 * 1 2 3 24 24 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00318 * 179.97438 * 7 6 4 26 26 H 0.97004 * 119.99608 * 264.99191 * 12 2 1 27 27 H 1.07995 * 126.02083 * 359.94053 * 16 15 13 28 28 H 0.96696 * 114.00207 * 90.02019 * 19 18 17 29 29 H 1.09009 * 109.47038 * 269.69785 * 21 20 18 30 30 H 1.09003 * 109.47077 * 29.68744 * 21 20 18 31 31 H 1.08998 * 109.47640 * 149.69144 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8589 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9953 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0182 -2.3571 14 8 1.7635 1.1343 -2.4388 15 6 2.7477 -0.6737 -3.5199 16 6 3.1383 -1.9807 -3.6128 17 7 3.6338 -2.1755 -4.8340 18 6 3.5761 -1.0555 -5.5213 19 8 3.9937 -0.8950 -6.7973 20 7 3.0278 -0.0938 -4.7496 21 6 2.7786 1.2974 -5.1349 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9041 -0.5273 4.4375 26 1 2.2491 -1.6317 -1.1527 27 1 3.0597 -2.7240 -2.8334 28 1 3.3105 -1.0680 -7.4594 29 1 3.6492 1.9046 -4.8869 30 1 2.5930 1.3496 -6.2077 31 1 1.9083 1.6732 -4.5969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:41 Heat of formation + Delta-G solvation = -33.882804 kcal Electronic energy + Delta-G solvation = -16926.765561 eV Core-core repulsion = 14016.127508 eV Total energy + Delta-G solvation = -2910.638054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30488 -40.41602 -38.33904 -36.91294 -35.17414 -34.37737 -32.29107 -29.84545 -28.07457 -27.20033 -24.76236 -22.96358 -22.19576 -21.22092 -19.72058 -19.19572 -18.12072 -17.56469 -17.28514 -16.69157 -16.17804 -15.89182 -15.23891 -15.16302 -14.84495 -14.58780 -14.09706 -13.75973 -13.73152 -13.59790 -13.18920 -13.17278 -12.75896 -12.12206 -11.63370 -11.36877 -11.26699 -10.94001 -10.85499 -10.84570 -10.03513 -9.53433 -8.35335 -6.41787 0.12841 1.14674 1.30664 1.38678 1.47448 1.54857 2.27321 2.28575 2.42650 2.80062 3.01002 3.64575 3.82023 3.97483 4.27990 4.34567 4.46771 4.58461 4.61559 4.71369 4.93233 5.03057 5.28477 5.35390 5.42920 5.58075 5.58220 6.13462 6.54714 6.59786 6.66332 6.79572 7.16392 7.32022 8.79763 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.047922 B = 0.005830 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.138646 B = 4801.306054 C = 5178.373648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.247 3.753 3 H 0.027 0.973 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.683 5.683 13 C 0.587 3.413 14 O -0.587 6.587 15 C -0.093 4.093 16 C 0.062 3.938 17 N -0.514 5.514 18 C 0.402 3.598 19 O -0.438 6.438 20 N -0.432 5.432 21 C 0.065 3.935 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.270 0.730 26 H 0.410 0.590 27 H 0.207 0.793 28 H 0.428 0.572 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 1.328 -18.696 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.143 3.857 3 H 0.045 0.955 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.332 5.332 13 C 0.374 3.626 14 O -0.470 6.470 15 C -0.209 4.209 16 C -0.093 4.093 17 N -0.244 5.244 18 C 0.102 3.898 19 O -0.242 6.242 20 N -0.125 5.125 21 C -0.076 4.076 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.247 0.753 27 H 0.224 0.776 28 H 0.290 0.710 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.776 1.748 -18.783 18.881 hybrid contribution -0.875 0.870 0.614 1.378 sum -1.651 2.618 -18.169 18.431 Atomic orbital electron populations 1.22354 0.97512 1.01932 0.99621 1.18827 0.91438 0.93126 0.82348 0.95516 1.21235 1.32465 1.13769 0.89734 0.92194 1.25534 0.96811 0.99315 0.95302 1.69969 1.46594 1.41928 0.98681 0.86019 0.79824 0.80374 0.77234 1.18490 1.22188 1.18454 1.45672 1.64841 1.14435 1.08237 1.16907 0.78197 0.85238 0.82220 1.90726 1.52877 1.18856 1.84557 1.20524 1.15752 0.95592 0.89037 1.22964 0.97480 0.93754 0.95109 1.70314 1.23884 1.23722 1.06455 1.20329 0.97963 0.83820 0.87695 1.84796 1.40188 1.90090 1.09150 1.45766 1.43669 1.12466 1.10552 1.22410 1.04265 0.77041 1.03857 0.93288 0.93965 0.91465 0.92046 0.75349 0.77613 0.71006 0.90024 0.85976 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.52 8.96 71.98 0.65 -5.87 16 2 C 0.25 11.30 2.11 44.24 0.09 11.39 16 3 H 0.03 1.36 6.72 -2.38 -0.02 1.34 16 4 C -0.53 -28.27 9.31 25.60 0.24 -28.03 16 5 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 6 C 0.03 1.67 5.45 84.66 0.46 2.13 16 7 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 8 Si 0.94 43.49 24.37 68.60 1.67 45.16 16 9 H -0.26 -11.27 6.87 99.48 0.68 -10.59 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.26 -11.86 6.53 99.48 0.65 -11.21 16 12 N -0.68 -26.06 5.05 -450.37 -2.28 -28.34 16 13 C 0.59 21.70 7.73 86.36 0.67 22.36 16 14 O -0.59 -24.67 14.54 -4.44 -0.06 -24.74 16 15 C -0.09 -2.86 6.92 39.80 0.28 -2.59 16 16 C 0.06 1.70 11.36 84.13 0.96 2.66 16 17 N -0.51 -14.56 11.22 -313.64 -3.52 -18.08 16 18 C 0.40 9.88 9.01 179.99 1.62 11.50 16 19 O -0.44 -7.40 13.52 -84.94 -1.15 -8.55 16 20 N -0.43 -11.28 3.20 -651.98 -2.09 -13.37 16 21 C 0.07 1.33 10.68 127.77 1.36 2.69 16 22 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 23 H 0.04 1.80 3.27 -2.38 -0.01 1.80 16 24 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.41 13.59 7.47 -92.71 -0.69 12.89 16 27 H 0.21 4.57 7.45 -2.91 -0.02 4.55 16 28 H 0.43 2.19 9.06 -74.06 -0.67 1.52 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.12 1.44 8.13 -2.39 -0.02 1.42 16 31 H 0.09 2.24 6.45 -2.39 -0.02 2.22 16 Total: -1.00 -70.59 267.08 -1.06 -71.64 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.26 Total: 14.75 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.32 Total: 16.24 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -7.58 Total: -114.51 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.21 Total: -33.28 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.16 kcal Total: -70.59 -1.06 -71.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.762 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds