Wall clock time and date at job start Thu Apr 9 2020 12:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34947 * 126.54850 * 2 1 4 4 O 1.35213 * 125.48562 * 0.22037 * 3 2 1 5 5 N 1.31529 * 109.02135 * 180.26915 * 3 2 1 6 6 C 1.33230 * 109.76144 * 0.02562 * 5 3 2 7 7 C 1.36727 * 107.96072 * 359.97438 * 6 5 3 8 8 C 1.46371 * 126.82402 * 179.97438 * 7 6 5 9 9 O 1.21739 * 119.99692 * 185.03220 * 8 7 6 10 10 N 1.34775 * 120.00292 * 5.03703 * 8 7 6 11 11 C 1.46507 * 120.00173 * 185.10194 * 10 8 7 12 12 C 1.52995 * 109.46772 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46806 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00385 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00463 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99526 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00474 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47043 * 60.00231 * 17 15 13 19 19 H 1.48501 * 109.47420 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47098 * 300.00474 * 17 15 13 21 21 H 1.09002 * 109.46923 * 264.31931 * 1 2 3 22 22 H 1.08999 * 109.47228 * 24.31605 * 1 2 3 23 23 H 1.09001 * 109.47355 * 144.32211 * 1 2 3 24 24 H 0.96702 * 113.99793 * 90.00550 * 4 3 2 25 25 H 1.07998 * 126.02027 * 180.02562 * 6 5 3 26 26 H 0.96998 * 119.99660 * 5.10028 * 10 8 7 27 27 H 1.08997 * 109.46801 * 299.99827 * 11 10 8 28 28 H 1.08992 * 109.47009 * 59.99757 * 11 10 8 29 29 H 1.08997 * 109.47340 * 299.99525 * 12 11 10 30 30 H 1.09001 * 109.47414 * 60.00327 * 12 11 10 31 31 H 0.97002 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2686 1.0841 0.0000 4 8 1.8515 2.3703 0.0042 5 7 3.5228 0.6880 -0.0058 6 6 3.5747 -0.6433 -0.0103 7 6 2.2915 -1.1153 -0.0066 8 6 1.8726 -2.5178 -0.0099 9 8 0.6917 -2.8001 -0.0984 10 7 2.7942 -3.4966 0.0851 11 6 2.3875 -4.8994 -0.0304 12 6 3.6162 -5.7998 0.1118 13 6 3.1979 -7.2427 -0.0064 14 1 2.1595 -7.4926 -0.1673 15 6 4.1408 -8.2441 0.0899 16 7 5.4053 -7.9400 0.2854 17 14 3.6223 -10.0326 -0.0574 18 1 2.9937 -10.2582 -1.3838 19 1 4.8150 -10.9067 0.0796 20 1 2.6461 -10.3548 1.0142 21 1 -0.3633 -0.1017 1.0226 22 1 -0.3633 0.9365 -0.4232 23 1 -0.3634 -0.8348 -0.5994 24 1 1.7330 2.7424 0.8889 25 1 4.4723 -1.2438 -0.0151 26 1 3.7267 -3.2723 0.2300 27 1 1.6704 -5.1356 0.7557 28 1 1.9269 -5.0650 -1.0042 29 1 4.3330 -5.5634 -0.6746 30 1 4.0773 -5.6342 1.0856 31 1 6.0686 -8.6444 0.3535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601428908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:47 Heat of formation + Delta-G solvation = -19.859375 kcal Electronic energy + Delta-G solvation = -16326.629932 eV Core-core repulsion = 13416.599979 eV Total energy + Delta-G solvation = -2910.029952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.33051 -39.05211 -37.52041 -35.13960 -34.12265 -32.90058 -30.47758 -28.69811 -27.22864 -24.96771 -22.97591 -21.80767 -20.93924 -20.04345 -18.78458 -17.41027 -16.65534 -16.40201 -15.87087 -15.22366 -14.86003 -14.52296 -14.41469 -14.04924 -13.37255 -13.17756 -12.86934 -12.76656 -12.38061 -12.31593 -11.25698 -11.05015 -10.69565 -10.41573 -10.37828 -9.94959 -9.88586 -9.58257 -9.29912 -8.78220 -8.51299 -8.36889 -6.11287 -4.14585 1.13638 2.06142 2.54180 3.30005 3.34271 3.36521 3.43833 3.54824 3.64846 4.39794 4.59604 4.68975 5.00889 5.01785 5.24709 5.25843 5.39894 5.82157 6.21159 6.24131 6.27317 6.35759 6.65378 6.76776 7.28136 7.47249 7.57576 7.62295 7.85083 7.87453 8.22988 8.44773 8.90820 9.50387 11.00197 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.060245 B = 0.004202 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.660009 B = 6662.531622 C = 7094.930528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.429 5.429 3 C 0.387 3.613 4 O -0.441 6.441 5 N -0.487 5.487 6 C 0.051 3.949 7 C -0.069 4.069 8 C 0.585 3.415 9 O -0.554 6.554 10 N -0.705 5.705 11 C 0.124 3.876 12 C 0.012 3.988 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.105 0.895 24 H 0.403 0.597 25 H 0.189 0.811 26 H 0.401 0.599 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 16.735 1.427 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.122 5.122 3 C 0.088 3.912 4 O -0.241 6.241 5 N -0.216 5.216 6 C -0.104 4.104 7 C -0.185 4.185 8 C 0.371 3.629 9 O -0.435 6.435 10 N -0.354 5.354 11 C 0.002 3.998 12 C -0.026 4.026 13 C -0.563 4.563 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.099 0.901 22 H 0.107 0.893 23 H 0.124 0.876 24 H 0.260 0.740 25 H 0.205 0.795 26 H 0.236 0.764 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.597 17.020 0.764 18.270 hybrid contribution -0.538 -1.161 0.501 1.374 sum -7.135 15.860 1.265 17.437 Atomic orbital electron populations 1.22251 0.75242 1.05362 1.04597 1.45633 1.08435 1.05632 1.52526 1.20205 0.84575 0.81319 1.05133 1.84809 1.87066 1.18106 1.34158 1.70283 1.16392 1.12928 1.21970 1.22621 0.95745 0.90083 1.01916 1.20864 0.91015 0.88679 1.17960 1.16674 0.85986 0.82817 0.77464 1.90782 1.16891 1.84022 1.51770 1.46023 1.10580 1.07346 1.71426 1.21820 1.00400 0.76601 1.00942 1.19340 0.91595 0.93605 0.98020 1.20988 0.94358 0.90465 1.50459 0.92281 1.24987 0.94865 0.99416 0.94918 1.69942 1.00861 1.33221 1.49125 0.86568 0.77958 0.84192 0.78791 1.20114 1.21222 1.20118 0.90107 0.89343 0.87609 0.74027 0.79457 0.76428 0.92149 0.92248 0.95706 0.95737 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.57 59.84 0.63 1.30 16 2 N -0.43 -5.50 3.20 -122.12 -0.39 -5.89 16 3 C 0.39 4.85 9.00 -89.60 -0.81 4.05 16 4 O -0.44 -4.09 13.44 -17.33 -0.23 -4.32 16 5 N -0.49 -6.91 11.22 -14.62 -0.16 -7.07 16 6 C 0.05 0.68 11.35 -17.49 -0.20 0.48 16 7 C -0.07 -1.00 6.92 -81.97 -0.57 -1.56 16 8 C 0.59 9.85 7.77 -12.99 -0.10 9.75 16 9 O -0.55 -10.74 15.02 5.15 0.08 -10.67 16 10 N -0.70 -11.83 5.53 -61.71 -0.34 -12.17 16 11 C 0.12 2.52 5.62 -4.04 -0.02 2.49 16 12 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 13 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 0.65 8.02 -51.93 -0.42 0.24 16 23 H 0.11 1.25 6.72 -51.93 -0.35 0.90 16 24 H 0.40 1.53 9.06 45.56 0.41 1.94 16 25 H 0.19 1.98 7.49 -52.49 -0.39 1.59 16 26 H 0.40 5.77 7.44 -40.82 -0.30 5.46 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -33.40 278.93 -5.45 -38.85 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.70 Total: 2.24 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.62 Total: 3.72 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.16 Total: -50.04 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.16 Total: -14.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.40 -5.45 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601428908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.993 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds