Wall clock time and date at job start Thu Apr 9 2020 12:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.53003 * 109.47428 * 120.00568 * 2 1 3 5 5 C 1.50704 * 109.46946 * 294.99910 * 4 2 1 6 6 H 1.08005 * 119.99693 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99954 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00099 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00133 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47102 * 59.99764 * 9 7 5 11 11 H 1.48495 * 109.47432 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47023 * 299.99966 * 9 7 5 13 13 C 1.53000 * 109.46806 * 240.00408 * 2 1 3 14 14 N 1.46905 * 109.47234 * 64.99923 * 13 2 1 15 15 C 1.46902 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.50706 * 109.46577 * 179.97438 * 15 14 13 17 17 C 1.38423 * 122.53707 * 90.00235 * 16 15 14 18 18 C 1.33386 * 114.91876 * 179.97438 * 17 16 15 19 19 S 1.75888 * 109.59475 * 359.97438 * 18 17 16 20 20 C 1.33387 * 122.53877 * 269.70731 * 16 15 14 21 21 H 1.09002 * 109.46845 * 299.99403 * 1 2 3 22 22 H 1.08999 * 109.47169 * 59.99380 * 1 2 3 23 23 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46885 * 54.99654 * 4 2 1 25 25 H 1.08998 * 109.47156 * 174.99954 * 4 2 1 26 26 H 0.97000 * 120.00492 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47089 * 304.99913 * 13 2 1 28 28 H 1.09001 * 109.47170 * 184.99693 * 13 2 1 29 29 H 1.00896 * 110.99866 * 56.04214 * 14 13 2 30 30 H 1.09000 * 109.46894 * 60.00165 * 15 14 13 31 31 H 1.09000 * 109.47263 * 299.99731 * 15 14 13 32 32 H 1.08003 * 122.54037 * 359.97438 * 17 16 15 33 33 H 1.08003 * 125.20268 * 180.02562 * 18 17 16 34 34 H 1.08002 * 125.20638 * 0.02563 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9744 2.3757 7 6 1.9934 -0.4020 3.7282 8 7 2.6775 -1.5185 3.8509 9 14 1.4999 0.5630 5.2496 10 1 0.0200 0.6696 5.3097 11 1 1.9959 -0.1365 6.4619 12 1 2.0921 1.9234 5.1866 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0376 -2.4457 15 6 2.1246 -0.6270 -3.6673 16 6 1.7074 0.1783 -4.8709 17 6 2.4986 1.1795 -5.4075 18 6 1.9818 1.7942 -6.4725 19 16 0.4110 1.0988 -6.8504 20 6 0.5505 -0.0235 -5.5034 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6054 -1.7199 1.2950 25 1 3.1264 -0.7996 1.2055 26 1 2.9255 -1.8411 4.7314 27 1 1.6053 -1.7197 -1.2953 28 1 3.1263 -0.7994 -1.2058 29 1 1.9880 0.9874 -2.3966 30 1 1.6901 -1.6247 -3.7298 31 1 3.2115 -0.7049 -3.6407 32 1 3.4613 1.4430 -4.9950 33 1 2.4557 2.5957 -7.0196 34 1 -0.1883 -0.7621 -5.2293 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:49 Heat of formation + Delta-G solvation = 13.267121 kcal Electronic energy + Delta-G solvation = -14279.588059 eV Core-core repulsion = 11917.287794 eV Total energy + Delta-G solvation = -2362.300265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.58654 -36.45533 -33.74255 -31.91998 -29.77740 -27.11315 -26.31415 -24.43358 -22.80132 -22.05815 -19.29125 -18.65438 -17.59172 -16.32464 -15.80090 -14.84967 -14.65334 -14.23206 -13.86789 -13.39205 -13.03067 -12.88038 -12.51133 -12.25805 -11.99687 -11.64614 -11.48726 -11.30050 -10.87765 -10.82029 -10.72702 -10.27200 -10.22084 -9.67708 -9.16113 -8.97220 -8.86800 -8.52066 -8.30891 -8.07671 -5.95871 -3.97007 0.93000 1.57299 1.88758 2.60268 3.35819 3.40025 3.42716 4.47718 4.61842 4.86745 4.99337 5.23581 5.35465 5.39873 5.54936 5.66368 5.76249 5.88889 5.97162 6.17972 6.31870 6.41734 6.43750 6.57159 6.71453 7.03228 7.20783 7.21788 7.37093 7.65762 7.71771 7.87463 8.04399 8.48521 9.09200 9.66263 11.15674 Molecular weight = 239.10amu Principal moments of inertia in cm(-1) A = 0.059426 B = 0.003680 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.061745 B = 7606.689107 C = 7711.996994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.116 3.884 16 C -0.099 4.099 17 C -0.127 4.127 18 C -0.215 4.215 19 S 0.079 5.921 20 C -0.187 4.187 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.039 0.961 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.338 0.662 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 3.883 -20.251 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.313 5.313 15 C -0.016 4.016 16 C -0.111 4.111 17 C -0.158 4.158 18 C -0.351 4.351 19 S 0.342 5.658 20 C -0.323 4.323 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.156 0.844 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.374 3.755 -21.270 21.861 hybrid contribution 1.828 0.415 2.033 2.765 sum -1.546 4.170 -19.237 19.745 Atomic orbital electron populations 1.21587 0.95725 1.00544 1.00145 1.21201 0.96019 0.98913 0.93988 0.92853 1.19121 0.95896 0.95577 0.90420 1.21209 1.34634 1.08283 0.91012 0.92617 1.25018 0.95339 0.95102 0.99085 1.69955 1.39035 1.21284 1.23478 0.86687 0.78918 0.80095 0.82475 1.20249 1.21382 1.20322 1.22182 0.97223 0.97750 0.89370 1.60576 1.63952 1.05818 1.00956 1.20584 0.97294 0.96775 0.86928 1.18929 0.94700 0.98851 0.98657 1.20143 1.01579 0.97208 0.96866 1.25523 0.99246 1.06728 1.03569 1.84215 1.18505 1.31565 1.31532 1.25482 1.01761 1.05111 0.99967 0.92802 0.93936 0.94184 0.96549 0.96934 0.93051 0.91483 0.95698 0.84408 0.90380 0.94558 0.84439 0.82081 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.09 5.07 -3.82 -0.02 1.07 16 14 N -0.68 -10.01 5.94 -115.05 -0.68 -10.69 16 15 C 0.12 1.44 5.94 -4.97 -0.03 1.41 16 16 C -0.10 -1.15 5.31 -106.25 -0.56 -1.72 16 17 C -0.13 -1.34 9.98 -41.21 -0.41 -1.75 16 18 C -0.22 -2.06 11.23 29.04 0.33 -1.73 16 19 S 0.08 0.76 23.34 -107.50 -2.51 -1.75 16 20 C -0.19 -2.06 10.98 29.04 0.32 -1.74 16 21 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 22 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.34 4.84 8.72 -39.29 -0.34 4.50 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 31 H 0.04 0.44 8.13 -51.93 -0.42 0.01 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -29.84 299.69 -9.01 -38.84 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.26 Total: -0.13 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.79 Total: -21.17 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.05 Total: -37.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.84 -9.01 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.110 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds