Wall clock time and date at job start Thu Apr 9 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 13 13 C 1.46903 * 110.99807 * 275.00039 * 12 2 1 14 14 C 1.50705 * 109.46848 * 180.02562 * 13 12 2 15 15 O 1.21274 * 119.99973 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99593 * 180.02562 * 14 13 12 17 17 C 1.39505 * 119.99714 * 179.97438 * 16 14 13 18 18 C 1.42023 * 126.89233 * 359.71131 * 17 16 14 19 19 C 1.35248 * 103.95635 * 179.85305 * 18 17 16 20 20 O 1.34084 * 106.60666 * 0.39979 * 19 18 17 21 21 N 1.20920 * 111.74911 * 359.72463 * 20 19 18 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 26 26 H 1.00901 * 110.99898 * 151.04719 * 12 2 1 27 27 H 1.09001 * 109.47143 * 300.00154 * 13 12 2 28 28 H 1.08998 * 109.47112 * 60.00049 * 13 12 2 29 29 H 0.97000 * 119.99949 * 359.97438 * 16 14 13 30 30 H 1.08001 * 128.02586 * 359.97438 * 18 17 16 31 31 H 1.07997 * 126.70042 * 180.09919 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5886 -0.5216 3.5557 15 8 2.8697 -1.6982 3.4696 16 7 2.7287 0.1205 4.7324 17 6 3.1967 -0.5685 5.8515 18 6 3.5609 -1.9397 5.9178 19 6 3.9456 -2.1132 7.2028 20 8 3.7974 -0.9272 7.8106 21 7 3.3826 -0.0830 7.0508 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7094 1.1619 -3.4844 26 1 2.9174 -1.1205 1.0286 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6162 2.5525 29 1 2.5042 1.0616 4.8010 30 1 3.5381 -2.6732 5.1255 31 1 4.2982 -3.0294 7.6529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:56 Heat of formation + Delta-G solvation = 37.369262 kcal Electronic energy + Delta-G solvation = -16409.817102 eV Core-core repulsion = 13502.268770 eV Total energy + Delta-G solvation = -2907.548332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.92253 -39.92597 -36.03509 -35.30449 -32.83034 -32.33377 -31.48607 -29.21727 -26.03322 -25.02881 -23.51583 -22.10391 -20.67147 -19.85427 -18.34085 -17.65124 -17.30891 -16.58295 -16.15847 -15.55407 -14.77747 -14.40589 -13.88240 -13.58641 -13.39559 -13.20326 -12.58122 -12.13232 -11.58636 -11.52721 -11.34472 -10.95673 -10.82075 -10.45542 -10.21178 -10.13258 -9.79902 -9.77942 -8.93206 -8.87313 -8.52967 -7.44432 -6.08636 -4.15146 1.36941 2.01462 2.53751 2.90880 3.24786 3.29497 3.33716 3.37271 4.28047 4.36694 4.69544 5.04937 5.11913 5.18248 5.26239 5.42320 5.67122 5.71622 5.89970 6.35834 6.74594 7.02329 7.03551 7.13975 7.36787 7.71807 7.78635 8.06465 8.18019 8.23138 8.24705 8.53437 8.93449 9.51084 10.97828 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.060507 B = 0.004251 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.645755 B = 6585.671804 C = 6869.379606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.672 5.672 13 C 0.049 3.951 14 C 0.522 3.478 15 O -0.497 6.497 16 N -0.640 5.640 17 C 0.251 3.749 18 C -0.226 4.226 19 C -0.055 4.055 20 O 0.091 5.909 21 N -0.398 5.398 22 H 0.034 0.966 23 H 0.004 0.996 24 H 0.083 0.917 25 H 0.262 0.738 26 H 0.342 0.658 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.418 0.582 30 H 0.191 0.809 31 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -1.569 15.739 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.084 4.084 14 C 0.310 3.690 15 O -0.368 6.368 16 N -0.293 5.293 17 C 0.001 3.999 18 C -0.249 4.249 19 C -0.137 4.137 20 O 0.032 5.968 21 N -0.115 5.115 22 H 0.053 0.947 23 H 0.023 0.977 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.161 0.839 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.255 0.745 30 H 0.208 0.792 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.606 -1.392 16.173 16.628 hybrid contribution 0.927 -0.074 -1.547 1.805 sum 4.533 -1.465 14.626 15.382 Atomic orbital electron populations 1.21750 0.97624 0.99661 0.99442 1.19182 0.92810 0.92379 0.85099 0.97809 1.21188 1.31752 1.12716 0.90225 0.92037 1.24906 0.94943 0.94974 0.99078 1.69878 1.36482 1.22810 1.23730 0.86539 0.79093 0.79822 0.81837 1.20099 1.21274 1.20281 1.60561 1.33504 1.31578 1.04885 1.21801 1.01744 0.94973 0.89858 1.21450 0.76471 0.87957 0.83167 1.90621 1.46737 1.15761 1.83636 1.42860 1.65358 1.14401 1.06716 1.20754 0.99804 0.91419 0.87896 1.23129 1.06874 0.95977 0.98922 1.25966 1.02885 0.91582 0.93244 1.84792 1.62434 1.15402 1.34217 1.74034 1.22111 1.14393 1.01009 0.94698 0.97723 0.89862 0.92776 0.83914 0.92465 0.88089 0.74535 0.79167 0.76469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.19 37.16 0.34 -2.70 16 2 C 0.21 5.19 2.60 -68.86 -0.18 5.01 16 3 H 0.00 0.11 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -14.04 8.59 -34.44 -0.30 -14.33 16 5 H 0.06 1.65 7.62 -52.48 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.67 -14.13 5.93 -109.21 -0.65 -14.78 16 13 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 14 C 0.52 8.15 7.83 -10.98 -0.09 8.07 16 15 O -0.50 -9.14 13.48 5.56 0.08 -9.06 16 16 N -0.64 -8.36 5.42 -11.44 -0.06 -8.43 16 17 C 0.25 3.49 8.18 -154.82 -1.27 2.22 16 18 C -0.23 -2.87 9.86 -39.20 -0.39 -3.26 16 19 C -0.06 -0.52 12.28 29.67 0.36 -0.15 16 20 O 0.09 1.05 11.19 17.06 0.19 1.24 16 21 N -0.40 -5.40 12.10 31.19 0.38 -5.03 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.34 7.33 7.92 -39.29 -0.31 7.02 16 27 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 28 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 29 H 0.42 4.27 8.82 -40.82 -0.36 3.91 16 30 H 0.19 2.61 6.22 -52.49 -0.33 2.28 16 31 H 0.22 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 272.01 15.07 4.10 4.10 Total: -1.00 -30.98 272.01 -5.28 -36.26 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.29 Total: 6.64 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.63 Total: -2.75 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.30 Total: -52.42 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.27 Total: -7.82 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.98 -5.28 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.634 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds