Wall clock time and date at job start Thu Apr 9 2020 12:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 N 1.33322 * 126.54696 * 269.68449 * 17 16 15 19 19 N 1.28992 * 107.35198 * 179.83053 * 18 17 16 20 20 N 1.28786 * 108.72940 * 0.43690 * 19 18 17 21 21 H 0.97000 * 125.45190 * 179.71895 * 20 19 18 22 22 N 1.28888 * 109.09666 * 359.72523 * 20 19 18 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 28 28 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 29 29 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 30 30 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 31 31 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 7 4.4720 -0.5675 -6.3800 19 7 4.4792 -1.2490 -7.4752 20 7 3.2658 -1.5538 -7.7806 21 1 2.9924 -2.0610 -8.5609 22 7 2.4727 -1.0768 -6.8835 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 2.2490 -1.6317 -1.1527 28 1 3.6480 -1.1211 -3.3986 29 1 1.9760 -1.5503 -3.8327 30 1 1.7019 0.6477 -4.9480 31 1 3.3741 1.0764 -4.5137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136736668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:08:49 Heat of formation + Delta-G solvation = 71.119376 kcal Electronic energy + Delta-G solvation = -16284.175327 eV Core-core repulsion = 13410.383261 eV Total energy + Delta-G solvation = -2873.792066 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.60229 -38.95797 -35.24180 -34.61089 -34.00165 -32.38727 -31.47621 -28.91247 -25.60173 -25.19816 -24.64555 -22.14122 -20.78629 -19.37462 -19.26836 -17.42775 -16.93978 -15.87730 -15.28582 -15.14465 -14.48864 -14.20565 -13.77745 -13.13524 -12.78410 -12.50195 -12.27828 -12.14754 -11.63657 -11.42358 -11.27969 -11.08371 -10.99127 -10.90822 -10.70325 -10.43744 -10.31657 -10.21977 -9.05687 -9.01345 -8.53592 -7.90068 -6.11039 -4.20353 0.97941 1.95839 2.16051 3.26735 3.32028 3.33035 3.39882 3.69035 4.19415 4.23179 4.43062 5.00016 5.20707 5.24377 5.28258 5.44378 5.63830 5.77747 5.98536 6.10114 6.26379 6.83922 6.97912 7.16490 7.47332 7.56932 7.70592 7.92828 8.09198 8.16497 8.67460 8.78804 9.13064 9.47182 10.94900 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.054804 B = 0.004165 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.787291 B = 6721.520397 C = 6966.642511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.556 6.556 15 C -0.137 4.137 16 C -0.008 4.008 17 C 0.183 3.817 18 N -0.274 5.274 19 N -0.057 5.057 20 N -0.235 5.235 21 H 0.472 0.528 22 N -0.300 5.300 23 H 0.090 0.910 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -6.273 -16.555 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.289 3.711 14 O -0.435 6.435 15 C -0.179 4.179 16 C -0.049 4.049 17 C -0.099 4.099 18 N -0.147 5.147 19 N -0.053 5.053 20 N -0.080 5.080 21 H 0.326 0.674 22 N -0.152 5.152 23 H 0.108 0.892 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.692 -5.477 -16.789 17.863 hybrid contribution -0.110 -1.224 0.631 1.381 sum 2.581 -6.701 -16.158 17.682 Atomic orbital electron populations 1.22077 0.98477 0.99074 1.00922 1.18749 0.91026 0.94049 0.80021 0.93267 1.21192 1.32510 1.13246 0.90379 0.92130 1.24888 0.94807 0.94948 0.99046 1.69894 1.35822 1.22413 1.23979 0.86507 0.79193 0.79565 0.81821 1.21136 1.20193 1.20157 1.46522 1.64920 1.13584 1.10565 1.20220 0.78747 0.87482 0.84684 1.90666 1.51548 1.16069 1.85232 1.21627 1.03617 0.99200 0.93414 1.19740 1.03773 0.96536 0.84874 1.25908 0.86420 0.98996 0.98602 1.75930 1.20158 1.13941 1.04658 1.78948 1.04781 1.11253 1.10270 1.47807 1.02753 1.36863 1.20588 0.67393 1.74764 1.23474 1.15443 1.01523 0.89176 0.96600 0.95524 0.92521 0.77875 0.88824 0.89127 0.87895 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.65 2.56 -69.09 -0.18 6.47 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.71 -14.38 5.07 -54.93 -0.28 -14.66 16 13 C 0.50 9.53 7.79 -10.98 -0.09 9.45 16 14 O -0.56 -12.63 15.64 5.56 0.09 -12.54 16 15 C -0.14 -1.84 5.68 -27.88 -0.16 -2.00 16 16 C -0.01 -0.11 5.13 -27.88 -0.14 -0.25 16 17 C 0.18 2.30 7.62 -156.63 -1.19 1.11 16 18 N -0.27 -3.65 12.50 32.44 0.41 -3.25 16 19 N -0.06 -0.64 13.48 60.35 0.81 0.17 16 20 N -0.23 -1.98 7.91 60.34 0.48 -1.50 16 21 H 0.47 1.62 8.96 -340.52 -3.05 -1.43 16 22 N -0.30 -3.33 12.36 32.46 0.40 -2.93 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 31 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -32.43 277.20 -6.30 -38.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.18 Total: 1.69 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.81 Total: -1.24 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 2.45 Total: -46.37 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.43 -6.30 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.854 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds