Wall clock time and date at job start Thu Apr 9 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48500 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47166 * 299.99752 * 3 2 1 6 6 H 1.48498 * 109.47110 * 60.00098 * 3 2 1 7 7 C 1.38813 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99512 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99690 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46815 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47025 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00300 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99657 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00264 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47235 * 179.97438 * 15 13 12 17 17 N 1.33245 * 125.52410 * 269.69245 * 16 15 13 18 18 C 1.30832 * 109.82704 * 180.26051 * 17 16 15 19 19 N 1.34437 * 108.07767 * 0.02562 * 18 17 16 20 20 H 0.97001 * 126.82137 * 180.02562 * 19 18 17 21 21 N 1.30714 * 125.52919 * 90.00111 * 16 15 13 22 22 H 0.96997 * 120.00370 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00616 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.47538 * 59.99694 * 10 9 7 25 25 H 1.08998 * 109.47329 * 299.99555 * 10 9 7 26 26 H 1.09005 * 109.46633 * 60.00699 * 11 10 9 27 27 H 1.08989 * 109.47746 * 299.99892 * 11 10 9 28 28 H 0.97008 * 119.99870 * 0.02562 * 12 11 10 29 29 H 1.09008 * 109.47075 * 59.99854 * 15 13 12 30 30 H 1.08994 * 109.47339 * 300.00344 * 15 13 12 31 31 H 1.07998 * 125.96253 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0885 0.0006 13 6 1.1226 -7.2557 0.0005 14 8 -0.0903 -7.2557 0.0004 15 6 1.8761 -8.5607 0.0004 16 6 0.8968 -9.7062 0.0009 17 7 0.3985 -10.2983 1.0856 18 6 -0.4172 -11.2581 0.7320 19 7 -0.4562 -11.2989 -0.6111 20 1 -0.9752 -11.9078 -1.1595 21 7 0.4029 -10.2837 -1.0626 22 1 -0.4850 0.8400 -0.0004 23 1 0.3556 -2.3881 0.0005 24 1 2.6849 -3.7145 0.8905 25 1 2.6847 -3.7145 -0.8895 26 1 0.4370 -4.7621 -0.8887 27 1 0.4376 -4.7619 0.8913 28 1 2.7665 -6.0884 0.0002 29 1 2.5027 -8.6185 0.8905 30 1 2.5028 -8.6184 -0.8895 31 1 -0.9634 -11.9053 1.4023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147271600.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:20 Heat of formation + Delta-G solvation = 29.042251 kcal Electronic energy + Delta-G solvation = -15857.706294 eV Core-core repulsion = 12982.089627 eV Total energy + Delta-G solvation = -2875.616668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.06447 -40.65973 -37.32348 -35.48737 -34.32866 -33.17908 -32.65568 -30.60631 -28.80863 -25.58514 -23.79138 -23.16321 -22.31562 -20.95889 -19.37346 -19.20825 -18.21951 -17.02367 -16.84905 -16.51579 -16.19211 -16.03043 -15.26670 -15.21404 -15.04189 -14.43359 -14.30345 -13.33357 -13.11050 -13.03393 -12.92320 -12.65196 -12.48363 -12.03242 -11.84824 -11.30153 -11.08382 -10.99461 -10.99044 -10.63047 -10.14747 -9.05607 -7.96075 -5.27516 0.65004 1.49426 1.51013 1.60063 1.61120 1.69616 1.86079 2.30910 2.60038 3.17984 3.38510 3.68182 3.83602 4.04721 4.15066 4.22687 4.24366 4.47228 4.59010 4.60885 5.04316 5.15933 5.24536 5.35176 5.38905 5.50621 6.24897 6.27318 6.54054 7.10336 7.23375 7.30859 8.03039 8.25692 9.28017 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.085127 B = 0.003366 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.841969 B = 8316.750230 C = 8462.744528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.246 4.246 8 H 0.085 0.915 9 N -0.749 5.749 10 C 0.149 3.851 11 C 0.129 3.871 12 N -0.706 5.706 13 C 0.517 3.483 14 O -0.587 6.587 15 C -0.042 4.042 16 C 0.231 3.769 17 N -0.576 5.576 18 C 0.274 3.726 19 N -0.476 5.476 20 H 0.457 0.543 21 N -0.342 5.342 22 H 0.252 0.748 23 H 0.373 0.627 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.422 0.578 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -25.237 0.433 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.004 3.996 12 N -0.359 5.359 13 C 0.304 3.696 14 O -0.467 6.467 15 C -0.083 4.083 16 C -0.052 4.052 17 N -0.305 5.305 18 C -0.024 4.024 19 N -0.196 5.196 20 H 0.306 0.694 21 N -0.172 5.172 22 H 0.061 0.939 23 H 0.204 0.796 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.260 0.740 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.446 -24.822 0.053 25.217 hybrid contribution -0.571 0.600 -0.261 0.868 sum 3.875 -24.222 -0.208 24.531 Atomic orbital electron populations 1.69850 1.06902 1.26199 1.59349 1.25693 0.96438 1.01540 1.03448 0.84979 0.78380 0.79241 0.76556 1.18448 1.22122 1.22105 1.19711 0.91801 0.84805 1.41409 0.89707 1.42465 1.05770 1.01230 1.89772 1.20868 0.93529 0.83864 0.99522 1.21126 0.94861 0.82805 1.00843 1.45606 1.11361 1.04250 1.74696 1.20848 0.87686 0.86059 0.75038 1.90719 1.16517 1.88252 1.51225 1.20005 0.94919 0.83986 1.09428 1.23705 0.98013 0.97459 0.86059 1.70348 1.16378 1.11863 1.31902 1.27027 0.94990 0.95659 0.84750 1.48018 1.36065 1.27769 1.07700 0.69378 1.77859 1.11067 1.04875 1.23388 0.93944 0.79569 0.94117 0.94165 0.93213 0.93121 0.74030 0.83038 0.83433 0.71167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.67 13.06 21.65 0.28 -60.38 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 8 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -38.54 5.60 -343.45 -1.92 -40.46 16 10 C 0.15 5.68 6.37 86.38 0.55 6.23 16 11 C 0.13 4.50 5.79 86.38 0.50 5.00 16 12 N -0.71 -18.24 5.56 -463.06 -2.57 -20.82 16 13 C 0.52 14.87 7.82 87.65 0.69 15.56 16 14 O -0.59 -23.44 16.03 -3.04 -0.05 -23.49 16 15 C -0.04 -0.81 6.33 29.10 0.18 -0.63 16 16 C 0.23 5.82 6.63 138.63 0.92 6.74 16 17 N -0.58 -13.78 11.19 -191.80 -2.15 -15.93 16 18 C 0.27 4.02 13.13 180.36 2.37 6.38 16 19 N -0.48 -7.49 7.45 -60.49 -0.45 -7.94 16 20 H 0.46 3.37 8.96 -213.10 -1.91 1.46 16 21 N -0.34 -8.56 12.80 -51.33 -0.66 -9.21 16 22 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.37 20.86 7.67 -92.71 -0.71 20.15 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.42 7.34 8.47 -92.70 -0.79 6.56 16 29 H 0.15 2.03 8.14 -2.38 -0.02 2.02 16 30 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.27 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -85.27 282.27 -1.19 -86.46 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -2.22 Total: 21.39 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 6.51 Total: 22.35 kcal Atomic # 7 Polarization: -147.27 SS G_CDS: -7.47 Total: -154.74 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -85.27 -1.19 -86.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147271600.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.502 kcal (2) G-P(sol) polarization free energy of solvation -85.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds