Wall clock time and date at job start Thu Apr 9 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42893 * 109.47052 * 2 1 4 4 C 1.35598 * 117.00305 * 179.97438 * 3 2 1 5 5 N 1.32639 * 120.48727 * 359.97438 * 4 3 2 6 6 C 1.32524 * 120.70123 * 180.02562 * 5 4 3 7 7 N 1.38553 * 119.12733 * 179.97438 * 6 5 4 8 8 C 1.36973 * 119.99990 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99591 * 0.02562 * 8 7 6 10 10 C 1.38799 * 120.00172 * 180.02562 * 8 7 6 11 11 N 1.31570 * 119.99812 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99960 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47371 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47446 * 119.99815 * 12 10 8 15 15 H 1.48503 * 109.46849 * 239.99882 * 12 10 8 16 16 N 1.32441 * 121.74166 * 359.97438 * 6 5 4 17 17 C 1.32445 * 120.92759 * 359.77306 * 16 6 5 18 18 C 1.38663 * 119.20130 * 0.47568 * 17 16 6 19 19 O 1.36062 * 120.79769 * 179.78875 * 18 17 16 20 20 C 1.42905 * 116.99703 * 359.72236 * 19 18 17 21 21 H 1.09001 * 109.46413 * 60.00214 * 1 2 3 22 22 H 1.08994 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47050 * 300.00288 * 1 2 3 24 24 H 1.08998 * 109.46904 * 239.99991 * 2 1 3 25 25 H 1.09001 * 109.46413 * 119.99786 * 2 1 3 26 26 H 0.96998 * 120.00210 * 0.02562 * 7 6 5 27 27 H 0.97000 * 119.99737 * 179.97438 * 11 10 8 28 28 H 1.08002 * 120.39760 * 180.26873 * 17 16 6 29 29 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 30 30 H 1.09004 * 109.47054 * 299.99772 * 20 19 18 31 31 H 1.09000 * 109.47187 * 59.99828 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3507 1.5250 0.0005 5 7 4.1676 0.4800 0.0016 6 6 5.4821 0.6489 0.0026 7 7 6.3052 -0.4657 0.0042 8 6 7.6662 -0.3119 0.0058 9 1 8.0977 0.6781 0.0063 10 6 8.4908 -1.4284 0.0068 11 7 7.9651 -2.6345 0.0068 12 14 10.3470 -1.2186 0.0098 13 1 10.6817 0.2282 0.0100 14 1 10.9156 -1.8588 1.2230 15 1 10.9193 -1.8585 -1.2020 16 7 6.0297 1.8547 0.0022 17 6 5.2767 2.9443 -0.0038 18 6 3.8963 2.8127 0.0003 19 8 3.0919 3.9100 -0.0013 20 6 3.7353 5.1860 -0.0013 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9176 -1.3549 0.0041 27 1 8.5413 -3.4148 0.0071 28 1 5.7323 3.9235 -0.0085 29 1 2.9812 5.9732 -0.0022 30 1 4.3566 5.2797 0.8895 31 1 4.3588 5.2786 -0.8905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:41 Heat of formation + Delta-G solvation = -37.907776 kcal Electronic energy + Delta-G solvation = -16775.010238 eV Core-core repulsion = 13864.197648 eV Total energy + Delta-G solvation = -2910.812590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97840 -39.52891 -39.19089 -36.80020 -34.02465 -33.72200 -32.34917 -30.19409 -28.09014 -26.79601 -25.22303 -23.68147 -23.26324 -20.21333 -19.69909 -18.63090 -18.35856 -17.49755 -17.48558 -16.30901 -16.29855 -15.56510 -15.32086 -15.12548 -15.02312 -14.44825 -13.88011 -13.54113 -13.38948 -13.04116 -12.87531 -12.49623 -12.47372 -12.42848 -12.05243 -11.90924 -11.81345 -11.69620 -11.01977 -10.30493 -9.91619 -8.62788 -8.51678 -5.80837 0.38861 0.48703 1.44753 1.49332 1.60264 1.93181 2.24028 2.56341 2.80656 2.81656 3.35577 3.48438 3.98409 4.08249 4.10584 4.21896 4.34640 4.48747 4.55702 4.65566 4.84754 4.86254 4.96025 5.19681 5.21607 5.46664 5.75418 6.05870 6.16385 6.67434 6.70728 7.08300 7.33093 7.88511 8.66697 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.006649 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.207061 B = 4209.949626 C = 5262.407158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 O -0.304 6.304 4 C 0.376 3.624 5 N -0.632 5.632 6 C 0.504 3.496 7 N -0.525 5.525 8 C -0.302 4.302 9 H 0.110 0.890 10 C -0.026 4.026 11 N -0.925 5.925 12 Si 1.008 2.992 13 H -0.259 1.259 14 H -0.275 1.275 15 H -0.275 1.275 16 N -0.585 5.585 17 C 0.149 3.851 18 C -0.116 4.116 19 O -0.325 6.325 20 C 0.019 3.981 21 H 0.068 0.932 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.403 0.597 27 H 0.278 0.722 28 H 0.199 0.801 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 9.554 -0.025 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 O -0.209 6.209 4 C 0.184 3.816 5 N -0.376 5.376 6 C 0.149 3.851 7 N -0.141 5.141 8 C -0.432 4.432 9 H 0.128 0.872 10 C -0.226 4.226 11 N -0.564 5.564 12 Si 0.831 3.169 13 H -0.183 1.183 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.315 5.315 17 C -0.019 4.019 18 C -0.172 4.172 19 O -0.239 6.239 20 C -0.076 4.076 21 H 0.087 0.913 22 H 0.119 0.881 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.238 0.762 27 H 0.088 0.912 28 H 0.216 0.784 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.936 8.667 -0.020 11.751 hybrid contribution 0.330 -0.174 0.000 0.373 sum -7.606 8.493 -0.020 11.401 Atomic orbital electron populations 1.21795 0.89990 1.04290 1.03553 1.22808 0.96860 0.80370 1.01739 1.86270 1.15647 1.31547 1.87408 1.19234 0.84358 0.87433 0.90532 1.67375 1.04624 1.33160 1.32484 1.18918 0.83649 0.87204 0.95360 1.40474 1.04956 1.03827 1.64861 1.20122 0.79997 0.95654 1.47464 0.87209 1.26318 1.05768 0.93930 0.96584 1.69805 1.38376 0.98589 1.49677 0.84628 0.75321 0.79029 0.77931 1.18266 1.20065 1.20067 1.67843 1.39908 0.97439 1.26333 1.23306 0.87753 0.98333 0.92496 1.19030 0.91192 0.86377 1.20588 1.86036 1.33596 1.12869 1.91352 1.23264 1.00375 0.82145 1.01779 0.91282 0.88102 0.91279 0.92679 0.92684 0.76169 0.91228 0.78405 0.86226 0.92216 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 10.28 71.99 0.74 -2.28 16 2 C 0.06 1.81 6.06 71.99 0.44 2.25 16 3 O -0.30 -11.57 9.97 -76.87 -0.77 -12.33 16 4 C 0.38 16.10 7.55 84.96 0.64 16.74 16 5 N -0.63 -29.88 9.40 -310.40 -2.92 -32.79 16 6 C 0.50 25.52 8.38 261.42 2.19 27.72 16 7 N -0.53 -28.42 5.43 -194.36 -1.06 -29.48 16 8 C -0.30 -16.46 9.69 84.02 0.81 -15.65 16 9 H 0.11 5.97 7.04 -2.91 -0.02 5.94 16 10 C -0.03 -1.37 5.50 84.87 0.47 -0.90 16 11 N -0.93 -50.80 13.05 21.65 0.28 -50.51 16 12 Si 1.01 41.40 29.55 68.60 2.03 43.43 16 13 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 14 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 16 N -0.58 -27.47 9.09 -197.72 -1.80 -29.27 16 17 C 0.15 5.65 10.30 84.70 0.87 6.52 16 18 C -0.12 -4.50 6.75 22.76 0.15 -4.34 16 19 O -0.33 -10.74 10.36 -82.05 -0.85 -11.59 16 20 C 0.02 0.40 9.84 113.37 1.12 1.51 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 25 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 26 H 0.40 22.32 8.01 -92.71 -0.74 21.58 16 27 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.20 5.55 6.44 -2.91 -0.02 5.53 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.11 7.72 -2.38 -0.02 1.09 16 31 H 0.06 1.11 7.70 -2.39 -0.02 1.09 16 Total: -1.00 -65.28 276.54 2.77 -62.51 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.42 Total: 28.46 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 7.43 Total: 31.57 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -5.49 Total: -142.05 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.62 Total: -23.92 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -65.28 2.77 -62.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.601 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds