Wall clock time and date at job start Thu Apr 9 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 114.00004 * 2 1 4 4 C 1.52998 * 109.47007 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47233 * 65.00180 * 4 3 2 6 6 C 1.35745 * 117.00120 * 179.97438 * 5 4 3 7 7 C 1.39005 * 119.97303 * 179.72839 * 6 5 4 8 8 N 1.32027 * 120.02548 * 179.71813 * 7 6 5 9 9 C 1.32824 * 119.97551 * 0.55264 * 8 7 6 10 10 N 1.38985 * 120.02827 * 179.73863 * 9 8 7 11 11 C 1.36869 * 120.00131 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00149 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00238 * 180.02562 * 11 10 9 14 14 N 1.31592 * 119.99559 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00372 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46717 * 59.99975 * 15 13 11 17 17 H 1.48498 * 109.47245 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46908 * 299.99963 * 15 13 11 19 19 C 1.39184 * 119.94857 * 359.71875 * 9 8 7 20 20 N 1.32066 * 119.96970 * 359.97438 * 19 9 8 21 21 H 1.08994 * 109.46951 * 299.99389 * 1 2 3 22 22 H 1.08995 * 109.46745 * 59.99650 * 1 2 3 23 23 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46861 * 60.00021 * 3 2 1 25 25 H 1.08997 * 109.47266 * 300.00471 * 3 2 1 26 26 H 1.08996 * 109.47090 * 304.99969 * 4 3 2 27 27 H 1.08999 * 109.47084 * 185.00141 * 4 3 2 28 28 H 1.08004 * 119.98524 * 359.97438 * 7 6 5 29 29 H 0.97000 * 119.99610 * 359.97438 * 10 9 8 30 30 H 0.97001 * 119.99792 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.01719 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3005 0.3990 -1.3839 7 6 5.7857 -0.1891 -2.5462 8 7 7.0849 -0.3603 -2.7073 9 6 7.9276 0.0197 -1.7535 10 7 9.2951 -0.1650 -1.9196 11 6 10.1630 0.2272 -0.9366 12 1 9.7853 0.6805 -0.0320 13 6 11.5287 0.0433 -1.1026 14 7 11.9890 -0.5077 -2.2054 15 14 12.7133 0.5792 0.2386 16 1 12.4029 -0.1512 1.4938 17 1 14.1053 0.2756 -0.1801 18 1 12.5733 2.0396 0.4681 19 6 7.4402 0.6032 -0.5877 20 7 6.1407 0.7790 -0.4313 21 1 -0.3633 0.5137 0.8900 22 1 -0.3632 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6886 1.8464 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 3.8515 0.5682 0.8409 27 1 3.9786 2.1764 0.0889 28 1 5.1000 -0.5023 -3.3196 29 1 9.6344 -0.5718 -2.7322 30 1 12.9434 -0.6365 -2.3214 31 1 8.1244 0.9122 0.1888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:09:53 Heat of formation + Delta-G solvation = -29.268471 kcal Electronic energy + Delta-G solvation = -16201.193757 eV Core-core repulsion = 13290.755795 eV Total energy + Delta-G solvation = -2910.437961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.03628 -38.28214 -37.17545 -35.32322 -32.91851 -31.96266 -30.53192 -27.88889 -26.34720 -25.07638 -23.97014 -22.34797 -21.63940 -18.33785 -17.80018 -16.91170 -16.73295 -16.00307 -15.69421 -15.03826 -14.96714 -14.66237 -14.07614 -13.60597 -13.48809 -13.23955 -12.53541 -12.43324 -11.68924 -11.68357 -11.46741 -11.22643 -10.94756 -10.64912 -10.52328 -10.43734 -10.07229 -9.97381 -9.76287 -8.76857 -8.18814 -6.86722 -6.74600 -3.92827 2.00960 2.35561 3.08923 3.09883 3.10921 3.67885 3.74075 3.90293 4.59244 4.75398 4.99224 5.10742 5.13905 5.21822 5.26213 5.28585 5.42432 5.52308 5.55585 5.73509 5.86743 5.98419 6.35113 6.53251 6.97724 7.08232 7.09858 7.52547 8.05764 8.24438 8.56592 8.81415 9.12376 9.46427 10.40912 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.055554 B = 0.004315 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.892009 B = 6487.387354 C = 6875.328568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.079 3.921 5 O -0.308 6.308 6 C 0.114 3.886 7 C 0.118 3.882 8 N -0.513 5.513 9 C 0.290 3.710 10 N -0.518 5.518 11 C -0.305 4.305 12 H 0.106 0.894 13 C 0.027 3.973 14 N -0.878 5.878 15 Si 0.938 3.062 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.269 1.269 19 C -0.008 4.008 20 N -0.453 5.453 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.406 0.594 30 H 0.280 0.720 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 3.278 4.019 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C 0.003 3.997 5 O -0.216 6.216 6 C -0.068 4.068 7 C -0.050 4.050 8 N -0.239 5.239 9 C 0.045 3.955 10 N -0.126 5.126 11 C -0.435 4.435 12 H 0.124 0.876 13 C -0.179 4.179 14 N -0.513 5.513 15 Si 0.764 3.236 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.182 4.182 20 N -0.178 5.178 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.171 0.829 29 H 0.242 0.758 30 H 0.090 0.910 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.260 3.036 3.892 14.149 hybrid contribution 0.647 0.392 0.460 0.885 sum -12.612 3.428 4.352 13.775 Atomic orbital electron populations 1.22728 0.81490 1.02679 0.99674 1.88009 1.19243 1.27553 1.95327 1.22659 0.92742 0.85273 1.00694 1.22331 0.91386 0.98528 0.87482 1.86127 1.18271 1.78667 1.38569 1.19976 0.83894 1.07871 0.95099 1.22114 0.91167 0.96653 0.95025 1.67923 1.01960 1.23965 1.30087 1.19097 0.86669 0.97784 0.91998 1.40708 0.99707 1.52780 1.19396 1.19713 0.87156 1.37945 0.98691 0.87594 1.25394 0.97776 0.96648 0.98093 1.69699 1.15976 1.40301 1.25374 0.85786 0.78598 0.79378 0.79862 1.19404 1.20528 1.19426 1.22341 0.90037 1.07015 0.98806 1.67557 1.04281 1.16727 1.29253 0.94357 0.94133 0.89732 0.91733 0.92498 0.91707 0.91027 0.82857 0.75831 0.91003 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.25 10.67 -40.09 -0.43 -5.68 16 3 C 0.06 0.76 6.32 37.16 0.23 0.99 16 4 C 0.08 1.21 5.70 37.16 0.21 1.42 16 5 O -0.31 -5.74 10.09 -23.80 -0.24 -5.98 16 6 C 0.11 2.37 7.49 -16.94 -0.13 2.24 16 7 C 0.12 2.41 11.17 -17.18 -0.19 2.22 16 8 N -0.51 -11.74 10.52 -12.08 -0.13 -11.87 16 9 C 0.29 6.88 7.63 -154.66 -1.18 5.70 16 10 N -0.52 -12.90 5.44 -11.07 -0.06 -12.97 16 11 C -0.30 -7.55 9.55 -15.10 -0.14 -7.69 16 12 H 0.11 2.45 5.67 -52.49 -0.30 2.15 16 13 C 0.03 0.66 5.50 -17.45 -0.10 0.56 16 14 N -0.88 -22.75 13.05 55.49 0.72 -22.02 16 15 Si 0.94 18.89 29.55 -169.99 -5.02 13.87 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 C -0.01 -0.19 10.48 -17.10 -0.18 -0.37 16 20 N -0.45 -9.73 9.38 -12.91 -0.12 -9.85 16 21 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 27 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 28 H 0.15 2.64 8.06 -52.48 -0.42 2.21 16 29 H 0.41 10.46 8.01 -40.82 -0.33 10.14 16 30 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.16 3.33 5.94 -52.48 -0.31 3.02 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -28.35 277.81 -4.90 -33.25 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.45 Total: 10.59 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.36 Total: 6.47 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.42 Total: -56.71 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.67 Total: -11.66 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.35 -4.90 -33.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.978 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds